Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04590 ATGGAATGGAATAGAGGCCACACCATAGGCCATGGCTCCACAGCCACCGTCTCCCTCGCCACCTGCCACGGCGGAATCTTCGCCGTGAAGTCATCGGAGCTATCAAAGTCAGAGTCTTTACAGAGAGAACAGAGAATTCTGTCTTCTCTATGCTGTCCTTATGTGGTTACATATAAAGGATGTGACATTACCATGGAAAACAACAAGCTCATGTACAATCTCTTCATGGAGTACATGCCCTTTGGCACGCTTGTTCAGGAAACTCGCCGGCACGGTGGCCGGTTGGAGGAGCCGGTGATTGCATGCTACACTAGGCAAATTCTTCAGGGGTTAGAGCATTTGCATTCAAATGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTGATTGGTGAAGATGGAGCCAAAGTTGGAGACTTTGGATGTGCCAAGAGTGTTATTGATGATGCGGCGGCGATCGGCGGCACGCCGGTGTTCATGGCACCGGAGGTGGCGTGTGGGGAAGAACAAGGGTGTCCTAGTGATATTTGGTCACTTGGGTGTACTGTGATTGAAATGGCAACTTGTGCTTCACCATGGCCTAATGTGGCAGACCCAGTTTCAGTGCTTTACCATATAGCATATTCCGGTGAGGTACCTGAGATTCCAGGGTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTTAGGAGGAATCCAGAAGAGAGGTGGAGGGCTAGTCAACTTCTGAAGCATCCATTTCTTGGGGAATTATGTTCCAATGGTAAGCAAGTTCTGGAATCTAATTCATGTTCCCCAACAAGTATTCTTGAGCAAGGCTTTTGGAGTTGTGTGGAAGAAGAAGAATCAGAAAGCGTTGGCAATTTGATTCATAGTCATACATTTAGGGATTCACCTGCTGACAGGGTTAGAAGGTTAGCTTTGAGTTCAGGGGAGCCCTGTTGGGCATGGCATGATGATGATGATGATGATGGGAATTGGATCACAACTAGAGGCAATGAGGCAAGGGATGAAGTTGATGCTTTTGGCAATTGTCGGTCAGAGACAGGTTCAACTAGTGATGGGTTGGTAAAACTAAAAAGCAATGTGAAAGATAGGATTAGTGGGCATTTTTGTGAGGGTCACAAATGTAGGGATGCTAATGCTAGTGTTGTAATTAGTAACCTCAATTTTGAGAGAGGCATTGATAAGATGTCACTCCCTTCATCAGCATTTGAATTTTTATAA 1236 0.4612 MEWNRGHTIGHGSTATVSLATCHGGIFAVKSSELSKSESLQREQRILSSLCCPYVVTYKGCDITMENNKLMYNLFMEYMPFGTLVQETRRHGGRLEEPVIACYTRQILQGLEHLHSNGLVHCDIKGANILIGEDGAKVGDFGCAKSVIDDAAAIGGTPVFMAPEVACGEEQGCPSDIWSLGCTVIEMATCASPWPNVADPVSVLYHIAYSGEVPEIPGFLSEEAKDFLGKCFRRNPEERWRASQLLKHPFLGELCSNGKQVLESNSCSPTSILEQGFWSCVEEEESESVGNLIHSHTFRDSPADRVRRLALSSGEPCWAWHDDDDDDGNWITTRGNEARDEVDAFGNCRSETGSTSDGLVKLKSNVKDRISGHFCEGHKCRDANASVVISNLNFERGIDKMSLPSSAFEFL. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04590 411 FunFam Mitogen-activated protein kinase kinase kinase 17 2 305 - -
Seca4g04590 411 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Seca4g04590 411 SUPERFAMILY Protein kinase-like (PK-like) 3 281 IPR011009 -
Seca4g04590 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca4g04590 411 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04590 411 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04590 411 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 344 - -
Seca4g04590 411 CDD STKc_MAPKKK 2 251 - -
Seca4g04590 411 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04590 411 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04590 Seca-Chr4 84605646 84606881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04590 3 357 MAP Kinase Kinase Kinase AT5G55090 47.733 3.04e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g04590 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04590 K20716 - gmx:100819665 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04590 4 84605646 84606881 Seca4g04590 4 84605646 84606881 ECH
Seca4g04590 4 84605646 84606881 Seca12g00165 12 1530692 1532250 ECH