Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04588 ATGGTTAGAGGTTGTGGACTCTCCATGGATTCAGATCTAATTGGTAGCTTCTTCCTCCACAAGCCAAATGTTCTCAACTCTTTCCCTGAAGACATAAACCACCCCAAGTGGAAACTTAGTCCCAACAACAACATGGTGGAGGCCATAGTAACCACCAATGGCTCTTCTTCACCAACACGCACCAGCACCATCCCCTTCCAAGTCAACCTTAACTGTTATACCGATAATCACACCTCTCTGGGATCTTCTGATGACATGAGAACAGAAATGGACCTCTTCAAGGACAAGGACAACACTGATGACAGGGTTACCTCTGCCCCTGTCTCTGTCCCCAACAATGATCATAAACATGATCATTCTGATAATTCCCCTTTATTGGAATTCCAAATAAACACTGGTCTGAATCTTCTTACTACCAACAGTAGCAGTGATCAATCTATGGTGGACAATGGAATATTACCTAATCCAAGCCAAAAAACTAGGAACGAGGTGTCTGTTCTTCAAGCTGAGCTTGAGCGAACGAAGGTGGAGAATAATCGGTTAAAGGACATGCTTGAGGAGCTTAATAGCAATTACAATGCCCTGCAGATGCATTTGATGAGTATGATGCAAGACCAGAAGATGAAGGATGGTAAAAAACAGGAAGTGTTTGATGAAAAATTCAAAGAGAAGAAACAAGATGAGAATGAAGGAGTATTGGTGTCAAGACAGTTTATGGATCTTAGGTTAGCTACCAATATTGAGACAGATGAACCCTCTTCTTCATCTTTGGGAAGAAGTCAGGACAGAGCAGGATCAGCAGGGAGTAACATAGAAGTGGCTTCCATGGAACTAGGCACAAACAAGAATGGGAATGTTAGTGATGAAAGAGTTAGGTATGATCAAGAGAAGAAGGAATTTGATAGGGGGATTACTGAAAGAGAGGATAGCCCCCAAGATGATAAAATTCCAAGATTAAGTCCTCCAAAAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCAATGATCACTGATGGGTGTCAATGGAGAAAGTATGGACAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCTTATTATAGATGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGACAGAACAGTGCTTATCACAACATATGAAGGAAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACATCTTCAGCTGCAAGAATGTTACTTTCAGGATCAATGTCAAGCAGTGATGGCCTAATGAATGCAAACTTCCTGACAAGGACACTTCTTCCTTGCTCTTCTAGCATGGCAACAATCTCAGCATCTGCTCCATTCCCAACTGTTACACTTGACCTTACTCAATCTCCAAACCCTCTACAATTCCCAAGGCCTCCAAATCAGTTACAAATTCCCTTCCCTCAGAATTTTGCCAATTCCCCAGCATCTTTAATGCCTCAGATATTTGGTCAGGCACTCTACAACCAATCAAAGTTTTCTGGTCTACAAATGTCACAAGATGCAGCAGCAGGAGCAGGAGCAGATCCTTCACAATTGGGTAACCATCCACCACCAAACCTTGCTGACACAGTTACTGCTGCCATTGCTTCTGATCCAAACTTCACTGCAGCTTTAGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACCAAACAACAACAGTAGTAATACTACTAACAATAATGGCAATAACAATAGCAATGGGAAGCAATAA 1788 0.4318 MVRGCGLSMDSDLIGSFFLHKPNVLNSFPEDINHPKWKLSPNNNMVEAIVTTNGSSSPTRTSTIPFQVNLNCYTDNHTSLGSSDDMRTEMDLFKDKDNTDDRVTSAPVSVPNNDHKHDHSDNSPLLEFQINTGLNLLTTNSSSDQSMVDNGILPNPSQKTRNEVSVLQAELERTKVENNRLKDMLEELNSNYNALQMHLMSMMQDQKMKDGKKQEVFDEKFKEKKQDENEGVLVSRQFMDLRLATNIETDEPSSSSLGRSQDRAGSAGSNIEVASMELGTNKNGNVSDERVRYDQEKKEFDRGITEREDSPQDDKIPRLSPPKNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSSDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRPPNQLQIPFPQNFANSPASLMPQIFGQALYNQSKFSGLQMSQDAAAGAGADPSQLGNHPPPNLADTVTAAIASDPNFTAALAAAITSIIGGAQPNNNSSNTTNNNGNNNSNGKQ. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04588 595 SMART WRKY_cls 348 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g04588 595 MobiDBLite consensus disorder prediction 247 286 - -
Seca4g04588 595 MobiDBLite consensus disorder prediction 573 595 - -
Seca4g04588 595 MobiDBLite consensus disorder prediction 523 546 - -
Seca4g04588 595 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 136 583 IPR044810 GO:0003700
Seca4g04588 595 MobiDBLite consensus disorder prediction 94 121 - -
Seca4g04588 595 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g04588 595 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g04588 595 Coils Coil 157 205 - -
Seca4g04588 595 FunFam probable WRKY transcription factor 31 333 410 - -
Seca4g04588 595 MobiDBLite consensus disorder prediction 287 320 - -
Seca4g04588 595 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g04588 595 Gene3D WRKY domain 333 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g04588 595 MobiDBLite consensus disorder prediction 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04588 Seca-Chr4 84584399 84586892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04588 89 584 WRKY Transcription Factor Family AT1G62300 47.969 9.12e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g04588 WRKY 4.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04588 - - gmx:100127384 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04588 4 84584399 84586892 Seca6g04436 6 111939956 111942417 ECH
Seca4g04588 4 84584399 84586892 Seca4g04588 4 84584399 84586892 ECH
Seca4g04588 4 84584399 84586892 Seca4g04588 4 84584399 84586892 PCT