Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04571 ATGGCACTTCGCGGCGGAGTCAGATCGGGGATCTCTCTCTTCAACAAACTAGGGTTTCTCACTTCCCAGAGATCCACTCTCCAACGCTCCCCCGTTCCCCCTACCATTCTCTTGGCCTCCAGAAATTATGCCAACGTACCGGGGCAAAAGGAAGAAAAAGTTAAGGTCCCTCTGGCTATGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCAGCAGTGAAAGCTAATGCAGTGGAAAAGGTTGAGTCTGAGATTCTTCAATTTGTTGAGGCAGTAAAGAATAGTGCTGTAACTTCGCAGTTTATAAAGGACTTATCTGTTGCTAAGGATATTAGAGTAAAGGCCATCCGAGAGATTTGTGCTGAAGTGAAGTTTTCAGAGGTTACAAAGAACTTCCTTGGTACTATAAGCTTCCTGATTATATATTTTGTTTGTTGTGAAGTTGTCGTCGCTGAGAATGGGAGGCTTAAAAACATTGACACCATTGCAAAGAGATTTGTGGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCAACTGTTACCACTGTCTTTCCTCTTCCCCCTGAAGAGGAGAAGGCACTGAAGGAGACTCTTCAGGAAATCATAGGTTCTGGGGCAAAGGTTAGCCTCGAACAGAAGATTGATCCAAGCATACTTGGTGGTCTAGTGGTGGAGTTTAGCCAGAAGGTCTTTGACATGTCTATTAAGACTAGGGCACAACAGATGGAGAGGATCCTTCGAGAACCCGCAAATATCTCCAACATCTAG 780 0.4462 MALRGGVRSGISLFNKLGFLTSQRSTLQRSPVPPTILLASRNYANVPGQKEEKVKVPLAMFGGSGNYASALYIAAVKANAVEKVESEILQFVEAVKNSAVTSQFIKDLSVAKDIRVKAIREICAEVKFSEVTKNFLGTISFLIIYFVCCEVVVAENGRLKNIDTIAKRFVELAMAYKGEVKATVTTVFPLPPEEEKALKETLQEIIGSGAKVSLEQKIDPSILGGLVVEFSQKVFDMSIKTRAQQMERILREPANISNI. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04571 259 Pfam ATP synthase delta (OSCP) subunit 65 139 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 Pfam ATP synthase delta (OSCP) subunit 152 250 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 NCBIfam ATP synthase F1 subunit delta 66 250 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 PRINTS ATP synthase delta subunit signature 63 82 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 PRINTS ATP synthase delta subunit signature 210 225 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 PRINTS ATP synthase delta subunit signature 225 243 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 64 178 IPR026015 -
Seca4g04571 259 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 212 231 IPR020781 GO:0015986|GO:0016020|GO:0046933
Seca4g04571 259 Gene3D - 63 141 IPR026015 -
Seca4g04571 259 Hamap ATP synthase subunit delta [atpD]. 59 252 IPR000711 GO:0015986|GO:0046933
Seca4g04571 259 PANTHER ATP SYNTHASE DELTA CHAIN 39 252 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04571 Seca-Chr4 84392807 84397794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04571 91 259 Primary Pumps ATPases AT5G13450 53.846 1.13e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04571 K02137 - gmx:100790990 376.711