Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04568 ATGTTTAACGGTATGATGGATCCTGAATTGATCAGGATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAATTGGCTCGGATCCAACAACAGATGATGTCTAACCCAGAGCTGATGAGGATGGCCTCTGAAAGCATGAAGAACATGAACTCTGAAGACTTCAAACTTGCTGCTGAACAGTTAAAGCATACCCGTCCCGAAGAAATGGCTGAGATCAGTCAGAAGATGGCTAATGCAACACCTGATGAAGTAGCAGCTATGCGTGCCCGTGTTGATGCTCAGATCAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAGGTTCAATGATGCTTTGGAGAAGTATATGCGCGCTAAGGAAAACATTAAAGACATTCCATCTTCTCAAAGTAGAAAGCTCCTTTTGGCGTGCTCACTAAACTTGATGTCCTGTTACTTGAAGACAAAGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTTCTTAAGGATGCTGTTACTGATTTGAGCAAGGCCCTTGAAGTTTCCCCTGATGATGATACAATTGCAGAGCTTCTCCCTGAGCTTTATGGTTCTATGGATGTCACATTTAACCTTGTTGTCATCTTGCATGTAGGATTAGTAATTGAGGAAATAACTGAAGAAGACGAGAATGTGCCTTCTGGAAACAATAGAAGCTCTTCTTTGGAACAAACAGTGGTTCAACCAAAAAAATCTGGTAACTCCTCTAAGAGTTACAGTATAGCTAACAATGGAAATCCAAAAACAAATGCAGACAGTTTAGATACATTGAAAAAAGATCCAGAAGCTCTCAGGTCATTCCAAAACTTCATTTCAAATGCCGATCCTGCCACTCTGGCTTCTTTGAACACTGGACATCCCCAAGATGTGTCCCCAGATATGATTAAAGCTACCTCAGATATGATTGGCAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCATCTTCATTTCAAGGGGACAACCCATTTTTCAGAGGAGGTTCCCCTGATTCTCCTTTCAACTCTGGATCAATTCCTCCTAACGTGACACCTGACATGTTTAAAACAGCGAGTGATATGATAAGTAAAATGCCAGCAGATGAGCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCGTTTCCATCAACAGCAACCGTAGACAAGAATGAAAGAAATATTTCCCAGTCAAATTTCCCATCCTCAAGTACCAGTGGAACTCATGCTTTTGGAGAATCAAGTTCTTCTCACAATGCATTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGGTTAAAAATATGAGTCCGGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCCGAAGACGCAGCAAAAGCTCAGCAAGCCATGTCATCCTTGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCGGACAGAATTCAAAGAGGAGTGGAAGGTGTTAAAAAGACAAAGAACTGGCTGCTAGGGAAACCAGGCATGGTCTTTGCAATATGCATGCTCATCTTGGCTATAATTCTTCACCGGTTGGGCTTCATTGGTGGCTAG 1773 0.4168 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMNSEDFKLAAEQLKHTRPEEMAEISQKMANATPDEVAAMRARVDAQIKYQLNAAEMLKKQGNELHNQGRFNDALEKYMRAKENIKDIPSSQSRKLLLACSLNLMSCYLKTKQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVTDLSKALEVSPDDDTIAELLPELYGSMDVTFNLVVILHVGLVIEEITEEDENVPSGNNRSSSLEQTVVQPKKSGNSSKSYSIANNGNPKTNADSLDTLKKDPEALRSFQNFISNADPATLASLNTGHPQDVSPDMIKATSDMIGKMSPEELQKMLDMASSFQGDNPFFRGGSPDSPFNSGSIPPNVTPDMFKTASDMISKMPADELKKMFEMASSLKGKESFPSTATVDKNERNISQSNFPSSSTSGTHAFGESSSSHNAFSNMRNASQSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMVKNMSPEMMANMGEQFGFKLSPEDAAKAQQAMSSLSPESLDKMMLWADRIQRGVEGVKKTKNWLLGKPGMVFAICMLILAIILHRLGFIGG. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04568 590 MobiDBLite consensus disorder prediction 253 293 - -
Seca4g04568 590 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Seca4g04568 590 Gene3D Tetratricopeptide repeat domain 89 227 IPR011990 GO:0005515
Seca4g04568 590 MobiDBLite consensus disorder prediction 249 296 - -
Seca4g04568 590 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Seca4g04568 590 MobiDBLite consensus disorder prediction 418 482 - -
Seca4g04568 590 SMART tpr_5 103 136 IPR019734 GO:0005515
Seca4g04568 590 SMART tpr_5 180 213 IPR019734 GO:0005515
Seca4g04568 590 SMART tpr_5 146 179 IPR019734 GO:0005515
Seca4g04568 590 SUPERFAMILY TPR-like 95 224 IPR011990 GO:0005515
Seca4g04568 590 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Seca4g04568 590 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 365 - -
Seca4g04568 590 MobiDBLite consensus disorder prediction 417 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04568 Seca-Chr4 84363064 84368852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04568 93 216 Calmodulin-binding Proteins AT5G48570 35.385 1.04e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04568 - - gmx:100800315 958.362