Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04560 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATTCAGCAGTTTACTAACCATAGTGACAGTTAGATGTGGTCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCTCCTCAAGGCCCTCAGGTATCTATCTATGTGTTGGTAAAGTCACAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAACTAGCGGCATTTGAGGCAATAGATCAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTGCGGAGAAGAGACATCGTGTTCCTTCTGCTTATAACCGCTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCATAGAGAGGCTTTCAGCGCGGCAGCCAAAAACTGGGCACATTTCCCTCATATTCACTTTGCCAAGCAAGCAAAGTTGGACCAGGGAGAAGGAACTGAAAAGTCTAATGGATTCTACTAA 558 0.4355 MSMDMMATERVCYVHCNFCNTILAVSVPFSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQGPQVSIYVLVKSQKQHLSFEESSSKELGSSSKCNKLAAFEAIDQHEQPRIPPIRPAEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSAAAKNWAHFPHIHFAKQAKLDQGEGTEKSNGFY. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04560 185 Pfam YABBY protein 7 167 IPR006780 GO:0007275
Seca4g04560 185 CDD HMG-box_SF 122 158 - -
Seca4g04560 185 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Seca4g04560 185 Gene3D High mobility group box domain 116 174 IPR036910 -
Seca4g04560 185 SUPERFAMILY HMG-box 114 162 IPR036910 -
Seca4g04560 185 FunFam axial regulator YABBY 5-like 106 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04560 Seca-Chr4 84167631 84176136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04560 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 58.763 4.19e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca4g04560 YABBY 3.4e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04560 K25796 - gmx:100500091 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04560 4 84167631 84176136 Seca4g04560 4 84167631 84176136 PCT