Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04558 ATGCTATATTCCACAGTATCCGGTTCAATGTCTCAGTGGAGTGTTTCTTACGAGACCAAAATACATGAGTTATTTGAAACAATGAGACAGCAGGGACAGTATGGTGATCCATCTGCCAATACTTATGTTGCTGCCCAGATGCATCATATGGCTGGTCAAAGGGTGAAAACCAAGTCTGGTCATGGGGATGATGCTTCAAGCTCATATTTTCAAGGGCCGAGACCTGATCCTAAGTTGGCTTTGCAGAACAGGAGCAACGGTGATTCCAGATCTCAGGCTCATGAAGAAGATAGAGATGTTGGGTATGAAGGAAGTCATTTATCACTTGAAGGTCTTGAGCAGAATTTTCACGATGTCATTATTAAACTAACCAAAGAACAGCATGATGCTGAAGATGCAGAGCATGCCAGGCACAGAGAGAAAATAAATGCAATCAATACTCAGTGTGAAAAAAAATTAGCAGCACTCCGAGCTCGGCATAGCAGCCGAAGAGCTGAATTTCTTCGATGGGAATCACTTACAAGACAACAGCAGTACCAACAAATCATTAGAGATCCTTACTCCAGCAGTGGCATGGCACCCAGAGACCCTCATGGTTACAGCAATGTTAATGCTTCAGCTGCTGGGGGAGAAGTGCAACAAGGCTATTCTCCTGATCACTTTGATCCTCCTTACAGAGAGCGAGCTCGATTTCCTGGAAGTGCAAGAGAGCTGCATGATTCTCCTTCTTTTGAATTAGTGAATGACGAATTAGGGTCTCCCATGAAACGAGAGGATTACTGTTCTGAAATGGTTAGGTATAATAACAACTGTAGAGGGAACAGTATGGAGTGCGATCATGAATTCACTCGCACTCCTCCGAAGAAACAGATCCAGAAGAAGAGTGCACTTCTCAGAATCCAGACGGTAAAACCCAATCATAGAAACCACAATGTTGAACAGTTACGTTATGCTGGCTATGCTCCTGACTCTAACTCTAATTTCTTCAGGAGTAAGGAGCAACATGGGTATATAGGTCATGGGATGAAGGCCGAAGAGAGAGAAGAAAGCCCCATGGAGCTTGATATTTCTTTCGAATCAAACTCTCTGGTGGCCAAGGCTATTGTCGCACCTTCAAGTTTGGGTGCTCCTGTTTCTGATTCGAATTTGACTCCAGTTTCTGACTTGCCATGCAAAACAAATGATACCTCTAGTGCGGGCAAGGAATTGAGTTTGCAGAAGAATGTAGTTGATACTTCTTCTCAGCCTTGTGCTGGTAATCCTCGTGGGAAAAATGAGGTGGCAGTTTCAGTTGAAGTTGCTGATATGTGTTCTGGTAAATCGACCCCTAGGACTGTCAAGAAGAAAAAAATTGTTAAAAGAGTGGTGAAGAAAACTGTTGTGAACCCTAATTCAACTGTGTCAAGTTCACTATCTGAGAATATGCAGCATGGAACTGTGCAAGCAGATAGTGTCAAACTCAGTTCATCAACTACCCTCGGTCCTGACAAAACTGAGACTTGTTTGGAGGAGAAAAGCACCAATGTTGACAAGGTGTCTGTACCAGAAGGGAATTTGTTGACTGAAGACAAAAAAGGAGATATATCCCTGCCATGTTTGGGGCCAGATTGCAGGTCACAAGAATGTAAGACTGATAAAGCTTCTGATATTAGGAAAGTATCCAGGTTTGAAAGAGGAGGAAACATTTCAAATTCTCCATCTTGTTCTTCTAGTAGTGAAGGTAAAATGAGTGGTGCTGATTGTTTAGATGCAAATAGTTCTGTCCATGACTTGCTTTGCATGCCAAATACTGAAAAGGTTACTGATTCATTAAATGTCAGTACTTCTGATGAAATCAATTACATGGATTATGATATTAAGCAATTATGTCAGAATGAAGCGTCTCTAAACATCGGATGCCCAGAGAATAGAAATCTTGTAGATGTAGGAGATGAAATGAGTCGTAAATTGTTTAGTTCAACTGACAGTGTCTTTTCCACAGATCTTATAGATGCACGTAATTCTGCCGATAACAGGGTTTGTGGCTTCAATAAGAATGATCTTACAGGTTCAGAAGAGAATTTAATTGTTACTGGCAATGGGAATAATGGCACTGTCAGTAAGGCATATTATGAAAATATGGCCCCTACAAGAACTCAGAGTGCTATTTTAGAAGAAAAATTGGATATAGCCATCCCTCTGCAAATCAGTGGAAATGTTGCTTTTTCAAGTTCAGAAAATACTATGATCCCTCTACAAAGCAGTGTAATTGTTAACTTTTCAAGTTCAGGAAATACTAGGATTCAGGATGGTCTAGGTTGCCTACAACATGCCAGTGTTCTGAAGCCAGGTTCTGATAATGGATCATCTAATTTAGAAGATAGTATCACTGTTCACCATTTTGGTATCATGAAAGATGATAACGATGACAACAATGATTCACCACTTTCTAAAAGGAAAAAAGTCACTGCTAGTCAAAAAAGTTTTTCTCAATGTCAATCTGAATTCAGTGATGCAATTGTGGCTACCACATCTAATGCAGAAGTTCCTATCAGTTTTAGTGACAACCAAGCACATCAGAAAGAAAAAGTTGCATTGTCGAGCATGGGTATTCTGTCTGTTGCTCAGTCGAGGCCTTATTCAGAGGATATTGCTAAATTGTCTGACAGTATTTTGGCTGCAGGGTCTTTTGAGTCTATGGATACAAATAAGGAAGCCATGATTTCTGAGCATTTGGAATTGCAGCACTCAGATATTGTCTCAAATTCACTGTGTGAGGTTTTTGCCTTTCCAAATGTTCAGTTATCAGTGTTGGAACCTGAGCAGAAAGAAAATATTACTCCAATTGTGCCAGTAAGTAATACTGAAACTGACATTTTGGTTGTTGGAAACATAAAGGATGAAAAGATTGATTTACAGACTGTTGAAGAAAATTACCGGTATAAAGACTTTGTGCGAAGGTCTCCAAGGGCTGATATGGAATCTAATGATTTCAATGTGAAGGATGATTTACATACTCATCAGAACTTTATATCCTGCCCAGCTGATGGTGATGGAGTCACTACGAGTAATTCAAATGGTGAATTGATTGAGGATTCACCTGATGCTTTATTAGATATGTGTTCTCAAGGGATGACATCTGAAGTACCAGATACAAGGAATATAGAACATACAGCAATCCATGATGAAAACATTTGTGGGGATAAAGAACATCTGAATAACATATCTGTGGTTGAAAATGGTTCTGAGTCTGACTTACATACTTCATCAATACAGGATACTAAAAAAGTTATGAAGTCAGAACATGCAATTGGACATAGTAACCCAATAATAAGGAATATAATGCCAGAACAATCCCAAGTTTCTTCCAAAGTTACAACTAAGGGTATAAATTCATATTGTTCAGAAAAAAATGGGAGCAAAAATCAGCCTGGTGGTGTCATTCATAAAACTTTCCAAGGTCATTCTTTCACCTTTTCAAAGTCAAAGACAAGGACATCTGCCTCTTCAACCCATATTTCAAAACCTCGAACTTGGCATCGTTCAGGTAATAATCCTCCCACTTCTCTACCTAGAATCAAGCCTTTGGTAGGAACAGTTCCTCCAAAAAGGCCCATTCTAGAAAGGAAAGGGAACTTCCAAAATACCTCTTACATTCGTAAAGGTAACAGTCTAGTAAGGAAACCCACTCCAGTTTATGCTTTACCTCAAATCTCCTCTGCTAATCAGTCACCTTTGGACTTAAATGAAATACAAAAGAGCACCACATCTGAAGACCTGGCTGATGTGACAGATCAACCAATCTACTTGAAAACAGAAGCAAATGCTCCTCAGAAAAGACAGACAACACCTCCACTGCCCATTGACTCCAAATCAGAGGAAAATATATCTTCCCGATTGGTAGAACCTCCTTCCAGTGGCTGCTGTGAAAATGCATCAGATACTAGGAAATTTATAGAAACTAATGATGCACCAAACTGTTCTGATGATGTGCCGAAGCATTATGAAACTCCTGAAAATCAAACTGGTCCATCTAACAATGGTGAGAGCCAAGTTGAGACAAATGATGGAAATAATTCTTCTTTGATCACTAAGAGAATAGTATATATAAAGCCCAAAACAAATCAGTTGGTTGCAGCTTCAAATTCTTGTGATGTTATTATCTCTACTGATGACAAGGGCCAAACAGCCTTCTCCGATGGCTACTATAAGAGGAGAAAAAATCAATTGGTTAGGACTACATTTGAAAATCATATCAACCAGACAGCTGCTATGCCTAATAGCACTGTAAATTCTGATGGGCATGGGGCTAGTAAGGTTCTTTGCAACAAGAGGTTTACCAAGAGGCAGTTGAAAAAGGTGGAACAAGACTTGCAAGTTGTGATAGAGGGGTGTGAACAGAGGGTGAGCAGTGGTCTAGGAAGGCAATGTATGGTTCAGATTTCATTTGCAGTTGCTGGGAGTTCATGCAAACCTTCAAGAGCCTCATTAGTGTGGACACTTCATAGCAAAAATTCATCTGAAAATCACAGGGACTCATGGAATTATCAAAAGATTTTACCTCACTTGTTTCCATGGAAAAGAGCAACATATTTAAGAAACTTCATTCATAATTCTGCTTCAAGCTACAATAGTAGTTCCTTATCTGCTATCAGCAAGAAATTGCTTCTGTTAAGAAAGAGGGATGCTGTTTACACTAGGTCGACCCATGGGTTTTCTCTTTGGAAATCCAAGGTATTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGCACTCAAAAAAAGCTAATGAGGAAGCGACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGCAGAAAGATGTGGCTTGCATTGGTTCTCAGGCAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTACAAAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGACGGTGAGTCCCTGTCCTCTTCCTCTCCCTGTTCGAGTTTGGCTTCCAAAAGAACTTATATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGCATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAGAAAGTCAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGGTGGAGGGAAGTGTCCTTATATTCACGATCCTTCAAAAATCGCTGTCTGTACTAAGTTCCTAAATGGTTTATGTTCTACTCCCAAGTGCAAATTGACTCATAAGGTGATTCCAGAGAGAATGCCAGACTGTTCTTATTTTTTGCAAGGATTATGCTCAAACAGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCATCTGCATGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGATGAAACACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACAAAATGCAAGCTTCACCACCCCAAAAAGCAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGTAGCGGGCGTTACTTTGGTGGTTCTATTCCCGTTGATATTTCTGAACCTGGGATGATGATGCCTCCAAGGCAACGTCAACAGAAGGATGACCTTGAAAATGAACATTCCGATTACATCAGTCTTGAAGTGAATGAAGAAGTTAAAGACACCGTTGATCAATCATTTGAGCAGTCAACAACATTTTGTGACAATGATTCCTTGGATTTACTGTTGGATACTTCTGATGAACTTATTAAACCGATTCTTCTAATAACAAAATTCACTCAGTCCAGTAGCCTGGAAGTTTAG 5877 0.4012 MLYSTVSGSMSQWSVSYETKIHELFETMRQQGQYGDPSANTYVAAQMHHMAGQRVKTKSGHGDDASSSYFQGPRPDPKLALQNRSNGDSRSQAHEEDRDVGYEGSHLSLEGLEQNFHDVIIKLTKEQHDAEDAEHARHREKINAINTQCEKKLAALRARHSSRRAEFLRWESLTRQQQYQQIIRDPYSSSGMAPRDPHGYSNVNASAAGGEVQQGYSPDHFDPPYRERARFPGSARELHDSPSFELVNDELGSPMKREDYCSEMVRYNNNCRGNSMECDHEFTRTPPKKQIQKKSALLRIQTVKPNHRNHNVEQLRYAGYAPDSNSNFFRSKEQHGYIGHGMKAEEREESPMELDISFESNSLVAKAIVAPSSLGAPVSDSNLTPVSDLPCKTNDTSSAGKELSLQKNVVDTSSQPCAGNPRGKNEVAVSVEVADMCSGKSTPRTVKKKKIVKRVVKKTVVNPNSTVSSSLSENMQHGTVQADSVKLSSSTTLGPDKTETCLEEKSTNVDKVSVPEGNLLTEDKKGDISLPCLGPDCRSQECKTDKASDIRKVSRFERGGNISNSPSCSSSSEGKMSGADCLDANSSVHDLLCMPNTEKVTDSLNVSTSDEINYMDYDIKQLCQNEASLNIGCPENRNLVDVGDEMSRKLFSSTDSVFSTDLIDARNSADNRVCGFNKNDLTGSEENLIVTGNGNNGTVSKAYYENMAPTRTQSAILEEKLDIAIPLQISGNVAFSSSENTMIPLQSSVIVNFSSSGNTRIQDGLGCLQHASVLKPGSDNGSSNLEDSITVHHFGIMKDDNDDNNDSPLSKRKKVTASQKSFSQCQSEFSDAIVATTSNAEVPISFSDNQAHQKEKVALSSMGILSVAQSRPYSEDIAKLSDSILAAGSFESMDTNKEAMISEHLELQHSDIVSNSLCEVFAFPNVQLSVLEPEQKENITPIVPVSNTETDILVVGNIKDEKIDLQTVEENYRYKDFVRRSPRADMESNDFNVKDDLHTHQNFISCPADGDGVTTSNSNGELIEDSPDALLDMCSQGMTSEVPDTRNIEHTAIHDENICGDKEHLNNISVVENGSESDLHTSSIQDTKKVMKSEHAIGHSNPIIRNIMPEQSQVSSKVTTKGINSYCSEKNGSKNQPGGVIHKTFQGHSFTFSKSKTRTSASSTHISKPRTWHRSGNNPPTSLPRIKPLVGTVPPKRPILERKGNFQNTSYIRKGNSLVRKPTPVYALPQISSANQSPLDLNEIQKSTTSEDLADVTDQPIYLKTEANAPQKRQTTPPLPIDSKSEENISSRLVEPPSSGCCENASDTRKFIETNDAPNCSDDVPKHYETPENQTGPSNNGESQVETNDGNNSSLITKRIVYIKPKTNQLVAASNSCDVIISTDDKGQTAFSDGYYKRRKNQLVRTTFENHINQTAAMPNSTVNSDGHGASKVLCNKRFTKRQLKKVEQDLQVVIEGCEQRVSSGLGRQCMVQISFAVAGSSCKPSRASLVWTLHSKNSSENHRDSWNYQKILPHLFPWKRATYLRNFIHNSASSYNSSSLSAISKKLLLLRKRDAVYTRSTHGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREQKDVACIGSQAKRERIFRIGSVRYKMDPSRRTLQRISDGESLSSSSPCSSLASKRTYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKGGGKCPYIHDPSKIAVCTKFLNGLCSTPKCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASACEGFLKGYCADGNECRMKHSYVCPTFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNSSGRYFGGSIPVDISEPGMMMPPRQRQQKDDLENEHSDYISLEVNEEVKDTVDQSFEQSTTFCDNDSLDLLLDTSDELIKPILLITKFTQSSSLEV. 1959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04558 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1798 1825 IPR000571 GO:0046872
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1151 1182 - -
Seca4g04558 1958 Gene3D - 1743 1798 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 51 103 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 89 103 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 210 249 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 466 508 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1331 1352 - -
Seca4g04558 1958 FunFam zinc finger CCCH domain-containing protein 3 1746 1797 - -
Seca4g04558 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1716 1745 IPR000571 GO:0046872
Seca4g04558 1958 PANTHER CCCH ZINGC FINGER 279 1948 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1264 1352 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 221 235 - -
Seca4g04558 1958 Gene3D - 1799 1862 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1841 1855 - -
Seca4g04558 1958 SMART c3hfinal6 1825 1847 IPR000571 GO:0046872
Seca4g04558 1958 SMART c3hfinal6 1745 1769 IPR000571 GO:0046872
Seca4g04558 1958 SMART c3hfinal6 1716 1744 IPR000571 GO:0046872
Seca4g04558 1958 SMART c3hfinal6 1771 1796 IPR000571 GO:0046872
Seca4g04558 1958 SMART c3hfinal6 1798 1824 IPR000571 GO:0046872
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1268 1305 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1837 1895 - -
Seca4g04558 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1771 1797 IPR000571 GO:0046872
Seca4g04558 1958 FunFam Zinc finger CCCH domain-containing protein 7 1799 1860 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 466 497 - -
Seca4g04558 1958 MobiDBLite consensus disorder prediction 1151 1200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04558 Seca-Chr4 84099368 84112129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04558 1722 1851 C2H2 Transcription Factor Family AT2G32930 32.593 6.62e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g04558 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04558 - - gmx:100788859 1810.81