Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04557 ATGTTCGGGAGGGCACCGAAGAAGAGCGACAACACCAGGTACTATGAAATCCTGGGTGTCTCCAAGAACGCTTCTCAGGACGATTTGAAGAAGGCTTACAAGAAAGCCGCCATTAAGAATCACCCCGACAAGGGTGGTGATCCCGAGAAGTTCAAAGAGTTGGCACAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATACGTATGGTGAAGATGCACTTAAGGAAGGAATGGGTGGTGGAGGCGGTGGCCATGACCCATTTGACATCTTCCAGTCTTTCTTCGGTGGGAGTCCATTTTCAGGTGGCAGTAGTCGAGGACGGAGGCAGAGGCGGGGAGAAGATGTGGTTCACCCTCTCAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACACCTTGGTCCATCAATGATTCAACAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAAACCATCAATGATAGAGACCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTCCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGAATGACTCATGGGCAGAAGATTACATTCCCTAGTGAAGCTGATGAAGCACCAGATACAATTACTGGGGATATCGTTTTTGTGCTTCAGCAGAAGGACCATCCTAAGTTCAGAAGAAAGGGTGAAGACCTTTTCGTTGAGCACACTTTGTCCCTCACCGAGGCTTTGTGTGGTTTCCAGTTTGTGCTGACTCACTTGGATGGCCGCCAGCTCCTTATCAAATCAAACCCTGGGGAAGTTGTCAAGCCTGATGCATACAAGGCTATTAATGATGAGGGAATGCCGATGTACCAGAGGCCATTTATGAAGGGAAAGCTTTACATTCACTTCACTGTGGAATTCCCTGATTCTCTAAATCCTGACCAGGTTAAGGCTCTGGAGGCTGTCCTGCCAGCTAAACCTTCATCACAGTTGACAGACATGGAGCTGGATGAGTGTGAGGAGACTACACTTCATGATGTCAATATGGAAGAGGAGTTAAGGAGGAAGCAGCAGCAAGCTCAGGAGGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAAACCTCTGCTCCTTCTTTCAACTCACCGCTCTCTCCTCTTGCAATGGAGTTTCAGTTTCTTCCCAAGTTCTACCTTCTTCTCTCCTTATCCATCCTCTTCATTTCATCGCTTCACGTTCAAGCTAAAGTTAACTTCAAATACTGCGGTCAAGCTATTTATGGTGGAAAATTGATAATTGGAGTATCATACGTTGGAGTGCCTGTCCATACTGAAACCATTGATCTTTGTGATGAAGTATCCTGTCCTGTTACAAGCGGCAATTTTCTGATTTCTCACACCCAATCATTGCCTGCAATTACTCCACCGGGATCCTATGCTCTGAAGATGACCCTGAAGAATGACGACGGGGATCTGTTAACTTGCATTAAGTTTAACTTTAAAATCGTTTTTGGATCTTTTGTATCTGATATGTGA 1539 0.4594 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDTYGEDALKEGMGGGGGGHDPFDIFQSFFGGSPFSGGSSRGRRQRRGEDVVHPLKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMTHGQKITFPSEADEAPDTITGDIVFVLQQKDHPKFRRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDAYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPAKPSSQLTDMELDECEETTLHDVNMEEELRRKQQQAQEAYDEDDDMPGGAQRVQTSAPSFNSPLSPLAMEFQFLPKFYLLLSLSILFISSLHVQAKVNFKYCGQAIYGGKLIIGVSYVGVPVHTETIDLCDEVSCPVTSGNFLISHTQSLPAITPPGSYALKMTLKNDDGDLLTCIKFNFKIVFGSFVSDM. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04557 512 Pfam ML domain 432 503 IPR003172 -
Seca4g04557 512 CDD DnaJ 14 63 IPR001623 -
Seca4g04557 512 Coils Coil 343 363 - -
Seca4g04557 512 PRINTS DnaJ domain signature 66 85 IPR001623 -
Seca4g04557 512 PRINTS DnaJ domain signature 46 66 IPR001623 -
Seca4g04557 512 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca4g04557 512 SMART pgtp_13 405 501 IPR003172 -
Seca4g04557 512 Gene3D - 224 306 - -
Seca4g04557 512 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 125 360 IPR044713 GO:0006457|GO:0030544
Seca4g04557 512 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Seca4g04557 512 FunFam dnaJ protein homolog 10 109 - -
Seca4g04557 512 MobiDBLite consensus disorder prediction 349 378 - -
Seca4g04557 512 SUPERFAMILY E set domains 424 504 IPR014756 -
Seca4g04557 512 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Seca4g04557 512 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 121 179 IPR036410 -
Seca4g04557 512 FunFam Chaperone protein dnaJ 3 177 217 - -
Seca4g04557 512 CDD DnaJ_zf 122 176 IPR001305 GO:0031072|GO:0051082
Seca4g04557 512 SMART dnaj_3 12 66 IPR001623 -
Seca4g04557 512 Gene3D - 408 506 - -
Seca4g04557 512 Gene3D - 152 222 - -
Seca4g04557 512 Gene3D DnaJ domain 10 111 IPR036869 -
Seca4g04557 512 ProSiteProfiles Zinc finger CR-type profile. 87 181 IPR001305 GO:0031072|GO:0051082
Seca4g04557 512 Pfam DnaJ domain 14 71 IPR001623 -
Seca4g04557 512 Pfam DnaJ central domain 118 176 IPR001305 GO:0031072|GO:0051082
Seca4g04557 512 CDD DnaJ_C 175 308 - -
Seca4g04557 512 FunFam Chaperone protein dnaJ 3 251 322 - -
Seca4g04557 512 Pfam DnaJ C terminal domain 177 305 IPR002939 -
Seca4g04557 512 SUPERFAMILY HSP40/DnaJ peptide-binding domain 113 229 IPR008971 GO:0006457|GO:0051082
Seca4g04557 512 SUPERFAMILY HSP40/DnaJ peptide-binding domain 227 316 IPR008971 GO:0006457|GO:0051082
Seca4g04557 512 SUPERFAMILY Chaperone J-domain 8 106 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04557 Seca-Chr4 84072489 84082239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04557 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.89e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04557 K09503 - gmx:547558 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04557 4 84072489 84082239 Seca4g04557 4 84072489 84082239 ECH