Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04555 ATGGGTGTCTCAGGGAAGTGGATTAGGTCATTGGTTGGTCTAAAGAAATCAGAGAAGCCTGAGTCTTCGGAGAAGGATGGAAATAAGGTTGGCAAGTTTCGGCATCGGAGAAAGCATTCCATTGAAATTAACAATAGCAAACTTCAAAATGAGTTTGATGATGATGGTACCCCGCCTAATAGAGATTCAGACAATGCAAATCCTCATTCAAACCTTGATATCCATTATTCACCTTCTACTTCACAACAAGCACAGGATGCTGCACATAATCATCAAATCATGAGGGAAGAACGGGCTGCAACAGTCATTCAAACAGCATTTCGAGGATTCCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCCGTAAGAAAACAAGCTGCTATAACTCTCCGGTGTATGCAAGCATTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGGCATTGGAAAGTCAAACAGCACAACAGAAACTCCAGCAACAGCTTGCAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGCGTGGGGTCTGTTGAAGAAATTCAAGCCAAAATAATAAAGAGACAGGAGGCTGCAGCCAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGAACAAGGCAGCAGGCTGTTTCCTCCGGTTTTGAACCTGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTACGTCCTTGGGAGAATCGCTTTCTTGACATTAATATGAGGGATGGAGTAATGGCAGACGGAAATGGAGCTATTGCAGACGGAAATGGAGCTATTGATGGTAAAAAAGGAATCAGACCTCAGTTAAGATCTGCTAACACAAAATCAATTCCACCAAATATTCATCCAAACCTTGCCAGTCAGAAAACTGGTACCTCTCTTTCTGATGGCTGTGATTCTTCTTCACCTAGCAAGTCAGCAGGTTTGCTAGAGACATCAAACACACAGTCTGTTAAACCAATATCTAATGCAAATGTTCAAAATCCCATTGAAGAAACCAACTCAAAATCTGAAACTCGAAGATCTCACAGTAATCCAAAGGAGAGAACCACACAGGTAGATAAACAGGCAAAAAAGCGATTATCTCTGCCTAACAATGCAGGGGGAGGTCCTGGGGTTCAAACAACCAGACATCCTACAAGAAGTTATGTGAAAGGGACACATGGCCCTCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGATGTGA 1305 0.4437 MGVSGKWIRSLVGLKKSEKPESSEKDGNKVGKFRHRRKHSIEINNSKLQNEFDDDGTPPNRDSDNANPHSNLDIHYSPSTSQQAQDAAHNHQIMREERAATVIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQQQLANEARVREIEEGWCDSVGSVEEIQAKIIKRQEAAAKRERAMAYALAHQWQAGTRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINMRDGVMADGNGAIADGNGAIDGKKGIRPQLRSANTKSIPPNIHPNLASQKTGTSLSDGCDSSSPSKSAGLLETSNTQSVKPISNANVQNPIEETNSKSETRRSHSNPKERTTQVDKQAKKRLSLPNNAGGGPGVQTTRHPTRSYVKGTHGPQKPIRDKPKLNGGGM. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04555 434 Pfam IQ calmodulin-binding motif 97 117 IPR000048 GO:0005515
Seca4g04555 434 Gene3D - 95 138 - -
Seca4g04555 434 MobiDBLite consensus disorder prediction 12 30 - -
Seca4g04555 434 MobiDBLite consensus disorder prediction 1 91 - -
Seca4g04555 434 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Seca4g04555 434 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Seca4g04555 434 MobiDBLite consensus disorder prediction 61 89 - -
Seca4g04555 434 MobiDBLite consensus disorder prediction 300 434 - -
Seca4g04555 434 SMART iq_5 95 117 IPR000048 GO:0005515
Seca4g04555 434 SMART iq_5 118 139 IPR000048 GO:0005515
Seca4g04555 434 MobiDBLite consensus disorder prediction 397 411 - -
Seca4g04555 434 MobiDBLite consensus disorder prediction 300 362 - -
Seca4g04555 434 MobiDBLite consensus disorder prediction 363 385 - -
Seca4g04555 434 PANTHER IQ-DOMAIN 5-RELATED 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04555 Seca-Chr4 84052171 84058390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04555 1 406 IQD Protein Family AT3G22190 57.421 1.17e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04555 - - tpra:123923158 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04555 4 84052171 84058390 Seca4g04555 4 84052171 84058390 ECH