Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04532 ATGGATGAAATTGAGGTCCCTGCCCTTTTCCTCTGCCCCATTTCCTTGCAGCTTATGAGAGACCCTGTCACAGTGTGCACAGGAATCACTTACGACAGAGAAAACATAGCAAGATGGTTATCTTCCTACAGGAGCAATAGTTGCCCAGTTACTAAGCAACCACTCTTACACACAGATCTCACCCCAAACCACACTCTACACCGTTTGATCCAAACTTGGTGCACCCGTAATGGTTTGCAAGGAATTGAAAATGTTCCAATTCCAAAGCCAACCATTGACAAAACTCATGTTGTCAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCATTAGGAGGCTTCAATCTATTGCTCTTGAAAGCGAAAGTAACAAAATCTGTTTGGTTTCCTCAGGGGCAATAGATTTCTTGGCTTCAACCATGATGAACATAAGCCAAAAAGATTCAACTTTTATGAGTGAAGTTGCTATTGAAGTCTTGTTTCACCTGAATCCTTCAGGAGGAGAGCTTAAAAATCTGATAAACAAAGAGGGTATTCAATTTATTGAGTCATTATTTCAGGTCTTGAAGTTTGGGAATAACCAGTCTCGAGGTTATGCAACTATGTTATTGAAGTCAACATTTGAGGTGGCTGATCCAATCCAATTAAACAGTGTCAGAACTGAACTGTTTGTGGAAATTACAAGAGTTTTAAGGGATCAGATTTCAGAGAAAGCTTCTAAAGCAGCTTTGAAGCTTCTCGTGGAGTTGTGTTCATGGGGTAGAAACCGAGTCAAAGCAGTTGAGGGTGGTGTGGTTTTTGTCCTTGTTGAGCTTCTTCTTCAAGTCTCTGAAAGAAGAGTATGTGAACTCATGTTGATGGTTTTGGATAAACTCTGTGGGTGTGCAGAAGGAAGGGCTGAATTGTTGAAGCATGGAGCTGGAGTGGCCATTGTAGCCAAGAAAATTCTAAGGATTTCTCATGGGGCAAGTGATAGAGGGGTTAGAATTTTGGCTTCCATTTGTAGGTATTCAGCCACCCCTAGAGTCCTTCAAGAAATGTTGATATTTGGAGCTGTGTCAAAGTTGTGTTTGGTGCTTGAAGTTGAAGGTAGTTTCAAGGCCAAGGACAGAGCCAGGGAGATACTCAAATTGCACTCTGCGGTTTGGAAGAATTCCTCTTGTATTCCTCAGCATTTGCTTTCATCCTATCCATGA 1209 0.4177 MDEIEVPALFLCPISLQLMRDPVTVCTGITYDRENIARWLSSYRSNSCPVTKQPLLHTDLTPNHTLHRLIQTWCTRNGLQGIENVPIPKPTIDKTHVVKLLSEAKRFPDKQLKCIRRLQSIALESESNKICLVSSGAIDFLASTMMNISQKDSTFMSEVAIEVLFHLNPSGGELKNLINKEGIQFIESLFQVLKFGNNQSRGYATMLLKSTFEVADPIQLNSVRTELFVEITRVLRDQISEKASKAALKLLVELCSWGRNRVKAVEGGVVFVLVELLLQVSERRVCELMLMVLDKLCGCAEGRAELLKHGAGVAIVAKKILRISHGASDRGVRILASICRYSATPRVLQEMLIFGAVSKLCLVLEVEGSFKAKDRAREILKLHSAVWKNSSCIPQHLLSSYP. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04532 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Seca4g04532 402 CDD RING-Ubox_PUB 7 60 IPR045210 -
Seca4g04532 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Seca4g04532 402 SUPERFAMILY ARM repeat 98 380 IPR016024 -
Seca4g04532 402 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Seca4g04532 402 SUPERFAMILY RING/U-box 3 82 - -
Seca4g04532 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Seca4g04532 402 Gene3D - 91 392 IPR011989 -
Seca4g04532 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04532 Seca-Chr4 83345118 83346731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04532 2 402 U-box Gene Family AT2G35930 49.877 1.66e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04532 - - gmx:100778012 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04532 4 83345118 83346731 Seca4g04532 4 83345118 83346731 PCT