Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04531 ATGGCGACGTACTTTCATGGCAGCACTTCAGAAATCCAATCCTCTGCAGAAGGGTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGATGCAGCGCAACACCCAACGCCCAACATGCTTCTCGTCAATCCCAATACTTCCAACGCGCTTAACCTCTCCAACTTCTCCCACGCGCCCCCACCTCCATCACCTAATAATAATCACCACCACCAACAACAACACTTACTTGGAATCCTCGGATCCACCACCACCGACACTCCAAACCAACGCTCCTTCCTCGGACAACATGAAATCTCCGCCTTCCACGGCTTTCCCGCCGCTGCTACTTCAGCCGCAAATAATCCTCGTCTCCACTATAACCTATGGGGTTCGATATTTAATCAAACCCCATCATTAGTCACAGCAATTGGTTTTCATAGCCCTGCTCATCACCGTCAACAGGGCTTGTCACTGAGCCTTTCACCGCAACAAACAGCTTTCAGGTCTTTCTCCGGCGAGATGGATGCTTCCGGAAGCCGTGGCGGTGATGATGTGCGGGTTGTGGGGAATGGAATTTCGAGCATGCAGAGCGTTGTGTTGGGTTCCAAGTATTTGAAAGCGGCGCAGGAGGTTCTGGATGAAGTTGTGAATGTGGGTAAAGGAATCTGCAAAAGGGAATCTATGGAAGGGGCTAATAATAATAATAATAATAATAATAATAATAATAATAAAAAAGGAGGAGAAAATAGTGGTGGAGGAAAGCAACAAGCTGGAGGAGTAGAATTAAGCACTGCACAGAGACAAGAGCTTCAGATGAAGAAGACCAAGCTTGTCACCATGCTCGATGAGGTAGAGCTAAGGTACCGACAGTATCACCAACAAATGCAAATGGTGATATCATCATTTGAGCAAGCAGCGGGATATGGGGCAGCAAAATCTTACACAGCTCTTGCCTTGAAGACAATCTCAAAGCAATTTCGATGTCTTAAAGATGCAATTGCTTCACAAATTAAGACAACTTGCAAGAGCTTGGGTGAAGATGATTGCTTAGGTGCTAAGGTAGAAGGTTCTAGGCTGAGGTATGTTGATCACCATCTCCGACAACAGCGGGCATTACAGCAACTTGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTACCTGAAAGAGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACTGGACTAACTCGGAGTCAGGTTTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACATGGAGGAAATCAAGGATCAAGAGCAGAACAGTGGCTCACAGGATAACACAAACAAATCAAAAGATCAATCAACTAATGCTACACATGAATCATCAGGTGCAATAAAACTTCATTCAAAAGCAGAAAGCTTCAACAACCAAAACACTTCTCCAACTGAGATCTCCAATTCCAATTCATTGTCAACATCTCCCATTGGAGGAGGAGGAGGATCCTTCCAATCCTTCCATCTTACAGGGTCATCTCCAAACAAGCCAAGAAGTAACTCTGAAATGCAAAACTCCCAAGGCAGCACCCTTTCAGGAGAGACACCAAATAGAGATGCAGTACTCAACACAAAGTTTGACATTGAAAGACACCGCAAAGATGGATACTCTTTAATGACATCTGGCAATGAGAGTTATGGAGCATTCTCAATGGAAGATATTGGAAGGTTTAATGTCACTGATCAGCAGCAGCAATTGGCTCCAAGGTTTCATGGAAATGGTGTTTCTCTAACACTTGGACTTCCCCACAATGAGAATCTTTCTCTCTCAGCTGCAACACAGCATGGGTTTCTCTCACAGAACATGCATTTGGGAATGGGAAGCAATGAGAATGAGTTTTGTGCTATCAACAGTAATCAACCATCTTCTCATTCTGCCACCAGTTATGAAAGTATTGACATTCAAAACAGAAAAAGGTTTGCTGCTGCCCAGTTATTGCGGGATTTTGTGGCCTAA 2058 0.4446 MATYFHGSTSEIQSSAEGLQTLYLMNPNYVPYSDAAQHPTPNMLLVNPNTSNALNLSNFSHAPPPPSPNNNHHHQQQHLLGILGSTTTDTPNQRSFLGQHEISAFHGFPAAATSAANNPRLHYNLWGSIFNQTPSLVTAIGFHSPAHHRQQGLSLSLSPQQTAFRSFSGEMDASGSRGGDDVRVVGNGISSMQSVVLGSKYLKAAQEVLDEVVNVGKGICKRESMEGANNNNNNNNNNNNKKGGENSGGGKQQAGGVELSTAQRQELQMKKTKLVTMLDEVELRYRQYHQQMQMVISSFEQAAGYGAAKSYTALALKTISKQFRCLKDAIASQIKTTCKSLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQNSGSQDNTNKSKDQSTNATHESSGAIKLHSKAESFNNQNTSPTEISNSNSLSTSPIGGGGGSFQSFHLTGSSPNKPRSNSEMQNSQGSTLSGETPNRDAVLNTKFDIERHRKDGYSLMTSGNESYGAFSMEDIGRFNVTDQQQQLAPRFHGNGVSLTLGLPHNENLSLSAATQHGFLSQNMHLGMGSNENEFCAINSNQPSSHSATSYESIDIQNRKRFAAAQLLRDFVA. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04531 685 FunFam BEL1-like homeodomain protein 9 383 445 - -
Seca4g04531 685 Pfam Associated with HOX 195 331 IPR006563 -
Seca4g04531 685 MobiDBLite consensus disorder prediction 225 258 - -
Seca4g04531 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 463 - -
Seca4g04531 685 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Seca4g04531 685 Gene3D - 383 462 - -
Seca4g04531 685 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Seca4g04531 685 MobiDBLite consensus disorder prediction 55 76 - -
Seca4g04531 685 MobiDBLite consensus disorder prediction 456 553 - -
Seca4g04531 685 SUPERFAMILY Homeodomain-like 381 447 IPR009057 -
Seca4g04531 685 MobiDBLite consensus disorder prediction 224 258 - -
Seca4g04531 685 MobiDBLite consensus disorder prediction 451 554 - -
Seca4g04531 685 SMART prehox3 190 332 IPR006563 -
Seca4g04531 685 CDD homeodomain 380 441 IPR001356 GO:0003677
Seca4g04531 685 SMART HOX_1 380 444 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04531 Seca-Chr4 83287445 83292139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04531 1 685 Homeobox Transcription Factor Family AT2G35940 45.516 2.87e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g04531 POX 5.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04531 - - gmx:100786883 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04531 4 83287445 83292139 Seca4g04531 4 83287445 83292139 ECH
Seca4g04531 4 83287445 83292139 Seca4g04531 4 83287445 83292139 PCT