Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04516 ATGGGGTTTTTGTTGAAAGAAGCTTTGAAGACTCTATGTGCTCGGAATCAGTGGTGTTATGCTGTTTTCTGGAAGATCGGCTGCAACAATTCCAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCCATGGCATGCTGGTTTCCTTCCCAGTCTCAGCCAGGGATTCAGGAAGAGGACAGAGTCTGTTCATTGATTAACAAAATGATGGTGAATAATTCAGTCAATATCACTGGTGAAGGGATACTTGGACGGGCAGCATTTACAGGGAATCATCAGTGGGTTCTCTTAAACAATTTTGCTAGAGATGCATATCCACCAGAGGTATGTACTGAGGTGATCAATCAATTTTCAGCTGGAATGCAGACAGTAGCTGTTATTCCTGTGCTTCCCCATGGTGTTGTTCAACTTGGTTCTTTCTTGCCAGTAAGTCTTTTTCAATTCCATGCTTGTGGGTTATTGCTGCAGATAATGGAAAATATGGGATTTGTGAATGATGTCAAGAGCTTGATCTTGCAATTGGGATGCATTCCTGGTGCCCTTCTATCTGAAGACTATTCAACAAAACTTTCTAATGGAAGACTTGCTGGACCTGTGACTGATTGTGTGCCTGTGTCTGTTGATCCACCAGTCATTACCTCAAGCTGCACTCCAAATGTAGTTAATGGTTCCAACCAATTAAGTAATTCATCTCATGCTCCAAGGCCCATTGCTCAACAACCTCATCTTCTACAGGGAGAAATAAATAATTACCAGGGTTCTGTATTGACACCTCAAAACCATGCCCTAAACCAGATATTTGATAGCCTTTGCCAACCAAAGGCTCATTCAATGATTAAAACAAGTGTCAGTAGTGGCCAACAAGAGAATACATTTCTGAAGGCAGAAGCTCAAGTGATCCCTGCAAACCTTGATTCATGCCTGCAACAACATCCTGTTTCATATAATGCTAGTTCTGCATTCACTGAATTGGCTGGTTCTGGTCAATCAAGTTCAAATGACTGCAACCTTAAATATATGGAACAGCAAATCCTATCAGGTGTTGGGAGACGAAGTAATGTTAACCCTAATATGAATACATCAAGTGCCTTTAATATGTGCCAACTGAAAACAGATGGAGGCCAAATTTTTTATCAAAGTCAGAGTTCTGGTAGCAGTTCACTACTTGGAGGAGTCCCAATACGTAGTGGGATGAGTAATCTTTTAAGGACAAACATGATTAACTCCTCAGTTTCAAACTCTCCTGAGTTATCCACTGCTGATTTTTCTGGAACACAAAAAGTTGGGTTTGGAATTCAAAATGATAATTCAAATAAAGCTGGGATATACTCTGTGCCTAATTTGACTAGTCAATCAGCTACCAATCACATGCATCTGGAAGGCTCTAATCAGAAGAATCTTCCCCTTGATTTAAAGCATGTTCATGATGCTTTGGCTTCCACAGATCAAAGGATTGACGATGATTTGCTTCAGGCCCTTAAGATCACATCTCTTCAGCTTGAGGATCATGTGCCTATGAGTGATCAGATCAATGGTTTTCTTCGTGATTGCCTCAATAAAGATGTTTCTAATCAACATATGATGCAAATGAATGTTAAACATGAAGAAGCTTGTGCTCAACTTCCATCAGGTGATGACCTCTTTGATGTTTTAGGTGTTGATTTCAAAAGGAAACTGCTGAATGGAAACTGGAATAAGTTGCTTGTCAATGAATATGGCAATGCAGAAAATCAGGATAAAAAGGTAACATGTATGAATATGCCAGGTATAGGTCCTGATAATAGCTATTCAGTTAGTGAAGCAATATCAGACAGTGGCATCTTCTCTGGGACAGGCACTGACCACCTCTTAGATGCTGTGGTCTCAAGGGCTCAATCTGCTGCAAAAATGAATTCTGATGAAATGTCTTGCAGGACAACATTGACAAGGAGTAGTACCACCTCTGTTCCCTCTCCTGCCTGCAAGCAGGTTATGTCTGATCATGTTGTCCCGGGGGCATTGTTTGATTTTCCTAAGACGGGGGTTAAAACAGGTGCAGCGGAAACAGGTTCTCTTAGGTCTGGGTGTAGCAAGGGTGACACTGGAAACTGTTCTCAAACCACTTCTATATATGGGTCTCAACTTAGTTCATGGGTTGAGAATAGTAATAATGTGAAGCGTGAAAATAGTGTTTCTACTGGATACTCTAAACGGCCTGATGAAGTTTGCAAATCAAATCGTAAAAGGCTTAAACCTGGAGAGAACCCCAGGCCCCGACCTAAAGATCGCCAAATGATTCAAGATCGGGTGAAAGAGTTACGGGAAATTGTGCCAAATGGAGGCAAATGTAGCATAGATGCACTTCTGGAACGGACCATCAAGCATATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACTGGAGAATCTAAGATTGTTAGCAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATCATAGTTGAGGATCTTAATCATCCTCGTCAGATGCTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTCTGGAAATAGCTGACCTAATCAGAGGATTAGGTTTAACCATATTGAAGGGAGTCATGGAATCTCGCAACGACAAGATCTGGGCACGCTTCGCTGTTGAGGCAAACAGGGATGTAACGAGGATGGAAATCTTCATGTCACTGGTTCGACTTTTGGAGCAAACAGTGAAGGGTGGTGCTGCATCTTCATCCAATGCAATGGATAATAACATGATGGCTTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGTAGGCCTAGTAGTTTGCAATGA 2874 0.4165 MGFLLKEALKTLCARNQWCYAVFWKIGCNNSKLLIWEDCYYEPMACWFPSQSQPGIQEEDRVCSLINKMMVNNSVNITGEGILGRAAFTGNHQWVLLNNFARDAYPPEVCTEVINQFSAGMQTVAVIPVLPHGVVQLGSFLPVSLFQFHACGLLLQIMENMGFVNDVKSLILQLGCIPGALLSEDYSTKLSNGRLAGPVTDCVPVSVDPPVITSSCTPNVVNGSNQLSNSSHAPRPIAQQPHLLQGEINNYQGSVLTPQNHALNQIFDSLCQPKAHSMIKTSVSSGQQENTFLKAEAQVIPANLDSCLQQHPVSYNASSAFTELAGSGQSSSNDCNLKYMEQQILSGVGRRSNVNPNMNTSSAFNMCQLKTDGGQIFYQSQSSGSSSLLGGVPIRSGMSNLLRTNMINSSVSNSPELSTADFSGTQKVGFGIQNDNSNKAGIYSVPNLTSQSATNHMHLEGSNQKNLPLDLKHVHDALASTDQRIDDDLLQALKITSLQLEDHVPMSDQINGFLRDCLNKDVSNQHMMQMNVKHEEACAQLPSGDDLFDVLGVDFKRKLLNGNWNKLLVNEYGNAENQDKKVTCMNMPGIGPDNSYSVSEAISDSGIFSGTGTDHLLDAVVSRAQSAAKMNSDEMSCRTTLTRSSTTSVPSPACKQVMSDHVVPGALFDFPKTGVKTGAAETGSLRSGCSKGDTGNCSQTTSIYGSQLSSWVENSNNVKRENSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGGKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMESRNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGGAASSSNAMDNNMMAYHSFPQATQIPATGRPSSLQ. 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04516 957 MobiDBLite consensus disorder prediction 733 758 - -
Seca4g04516 957 CDD bHLH_AtLHW_like 747 816 - -
Seca4g04516 957 MobiDBLite consensus disorder prediction 715 729 - -
Seca4g04516 957 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 143 IPR025610 -
Seca4g04516 957 MobiDBLite consensus disorder prediction 715 758 - -
Seca4g04516 957 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 743 792 IPR011598 GO:0046983
Seca4g04516 957 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 951 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04516 Seca-Chr4 82934324 82941122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04516 545 928 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.731 6.40e-118 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04516 - - gmx:100812899 1437.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04516 4 82934324 82941122 Seca4g04516 4 82934324 82941122 ECH
Seca4g04516 4 82934324 82941122 Seca4g04516 4 82934324 82941122 PCT