Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04512 ATGAAGAAAAGAAACGAAAGAAATTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGAAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATAATGACTTTGGAGATACCAATAGAACTACTAGTAGCAATCATGAAGAAGTAAGGTTTTCAGAGGTAGTTGTGAAAGATGAAGAAGACATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTTGA 231 0.3723 MKKRNERNFSKKIKYACRKTLEDSRPRVRGRFAKNNDFGDTNRTTSSNHEEVRFSEVVVKDEEDMVDSSDIFAHIS. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04512 76 ProSiteProfiles CCT domain profile. 1 35 IPR010402 GO:0005515
Seca4g04512 76 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 52 IPR045281 GO:0009909
Seca4g04512 76 Pfam CCT motif 2 35 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04512 Seca-Chr4 82891526 82892070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04512 2 42 C2C2-CO-like Transcription Factor Family AT5G24930 48.780 4.03e-07 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g04512 CCT 6.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04512 - - aprc:113871720 134.42