Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04510 ATGGTAGGTATTCAGATCAAAGTTCACATTTTTCTCTTCTTCTCCCTGATGGTTACAATGGGTTATGGTGATACAAACCCAAATGATCTCAAAATTCTGAGTGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTGAAATGGCCAGAAAATGGAGATGATCCCTGTGGCCCTCCTTCATGGCCTTATGTGTTCTGCTCTGGAGGTAGAGTCACTCAGATTCAGGCTAAGAATCTGGGTCTTAAAGGATCATTGCCTCCAAACTTTAACCAGCTCTCAGAACTCCAAAATTTGGGTCTTCAACGCAACAACCTCAGCGGGATGTTGCCCACATTCAGTGGATTGTCCAAATTGCAATTCGCTTTCTTGGATTACAATGAGTTTGATGCAATCCCATCTGATTTCTTCAATGGACTCACCAGCATTAGGGTCTTGTCTTTGGAAGAAAACCCATTAAATGCTAGTACAGGGTGGTCATTTCCTATGGACTTAGAAAATTCAGTGCAATTAACCAATCTCTCTCTGGTGCATTGTAATTTGGTTGGACCATTGCCTGATTTTCTAGGCACATTGCCTTCTCTCACAAATTTAAGGCTTTCAGACAACATCATTTCTGGTGGGATTCCAGCTAGTTTTGGTCAATCTTCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGATGGTGGTGGGATGACAGGTCCTATTGATGTAATTGCTTCAATGATCTTCCTGAGACAGGTTTGGCTACATGGAAACCACTTCACTGGGACAATTCCACAGAACATTGGAAATCTAACTTCCTTGCAGGAGCTCAACCTTAACGGCAATCAACTTGTTGGCTTGATTCCAAATACCTTGGCAAATATGGACCTTGAGATACTGGTGTTAAATAATAACAGGTTCATGGGTCCAATTCCAAAGTTTAAGGCTGCCCAAGTATCTTATGATTCCAATCTCTTTTGTCAGTCTAAGCCTGGACTTGAATGTGCCCCTGAAGTTACTGTTCTACTGTATTTTCTCCACAATCTGGATTATCCATCATTCCTCACTACTAAATGGTCTGGTAATGAACCATGTGGAGAGCCATGGTTTGGATTGAACTGCAATCACAACTCAGAGGTATCTATAATCAATTTGCCTAGACAAAAGCTTAATGGTACACTGAGTCCCTCACTTGCTAAGTTAGATTCACTCCTTGAAATCAGGCTTGCAGGAAACAATATAACCGGGAATGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGGTTGCTGGATTTAGGTGATAATAATGTTGAGCCTCCATTGCCAAAGTTTCATGATGGTGTGAAGGTTATCATTGAGGGTAACCCTCTTCTTGCTAATCATTCTGGAATGAGCCCCCCCTTGCCTATTAGCAGCCCACCACCTCCAAGTGCACAGCCTTCACCGCACAACCCGTCACCGTCACCACCATCCTCTAGTCATAGTTCAAGCTCAAATCAATCTACGTCTATCCAATTTAAGCCTCAACCAAATAAATTCAAAAGATTCAAAACAGTAGTAATAGTAGCTGTAGTTGCAATCTTTGCTTTTACTGCTCTTTTGGTTATTTCTCTCTTCATATATTGTTTGAAGAAGAAAAAAGCCTCCTTGGATGCTCCTAGCTCTGTTGTGGTTCATACTCAAGATCCATCTGATCCAGAAAAGATGGTTAAATTTGCAGTTACAAATAGCACCATTGGAAGCTTATCAACAAAGACAGGGATAAGTTCTCTGACTAACATTAGTGGTGAAACTGAAAGCTCTCATTTAATTGAGGATGGCAACCTTGTCATCTCTGTTCAAGTTCTACGCAATGTCACAGACAATTTTGCTTCAGAAAATGAGCTAGGCCATGGTGGGTTTGGAACTGTTTACAAGGGTGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGTATGGAGCTGTTAGCAGTAAAGCATTGGATGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGACACCGACATTTGGTATCCCTGCTAGGATATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGCCTCTGGGTGCTCTAAGCAGACATCTTTTTCATTGGAAAAGCTTGAATTTGGAGCCATTGTCTTGGTCACAGAGGCTTGTAATAGCTCTTGATGTTGCTAGAGGGATGGAATACCTTCATAATCTTGCCCGCCAGACCTTCATCCATCGAGACCTCAAGTCTTCTAATATTCTCCTAGGGGATGATTTTCGGGCAAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAATCTGTGGCAACAAAGCTTGCTGGAACATTTGGATACCTCGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGATGTGTTCAGCTATGGTGTGGTATTGATGGAACTTTTGACTGGATTAATGGCTCTTGATGAGAGCCGACCAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCAAATTAAATCAAGCAGAGAAAAACTAATGTCTGCCATTGATCCAGCTCTTGAAGCAAGTGAAGAGACTTTTGAGAGCATTTCCATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCAAACCATAGGCCGGATATGGGGCATGCAGTCAATGTGCTGTCAGCATTAGTAGAGAAATGGCGACCAGTTGATGAAGAATTTGATTATGGCTGTGGCATTGACTACACTCAACCACTTCCCCAAATGTTGAAAATTTGGAAGGAAGCAGAAGGCAAAGATACCAGCTATACAAGTCTTGAAGACAGTAAAGGAAGTATACCAGCTAGGCCTGCTGGTTTTGCAGACTCCTTTACTTCTGCTGATGCTCGATGA 2895 0.4187 MVGIQIKVHIFLFFSLMVTMGYGDTNPNDLKILSDFRKGLKNPELLKWPENGDDPCGPPSWPYVFCSGGRVTQIQAKNLGLKGSLPPNFNQLSELQNLGLQRNNLSGMLPTFSGLSKLQFAFLDYNEFDAIPSDFFNGLTSIRVLSLEENPLNASTGWSFPMDLENSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSDNIISGGIPASFGQSSSIQVLWLNDQDGGGMTGPIDVIASMIFLRQVWLHGNHFTGTIPQNIGNLTSLQELNLNGNQLVGLIPNTLANMDLEILVLNNNRFMGPIPKFKAAQVSYDSNLFCQSKPGLECAPEVTVLLYFLHNLDYPSFLTTKWSGNEPCGEPWFGLNCNHNSEVSIINLPRQKLNGTLSPSLAKLDSLLEIRLAGNNITGNVPSNFTELKSLRLLDLGDNNVEPPLPKFHDGVKVIIEGNPLLANHSGMSPPLPISSPPPPSAQPSPHNPSPSPPSSSHSSSSNQSTSIQFKPQPNKFKRFKTVVIVAVVAIFAFTALLVISLFIYCLKKKKASLDAPSSVVVHTQDPSDPEKMVKFAVTNSTIGSLSTKTGISSLTNISGETESSHLIEDGNLVISVQVLRNVTDNFASENELGHGGFGTVYKGELEDGTKIAVKRMEYGAVSSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLEPLSWSQRLVIALDVARGMEYLHNLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAEWFWQIKSSREKLMSAIDPALEASEETFESISIVAELAGHCTAREANHRPDMGHAVNVLSALVEKWRPVDEEFDYGCGIDYTQPLPQMLKIWKEAEGKDTSYTSLEDSKGSIPARPAGFADSFTSADAR. 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04510 964 SMART LRR_typ_2 139 162 IPR003591 -
Seca4g04510 964 SMART LRR_typ_2 92 114 IPR003591 -
Seca4g04510 964 SMART LRR_typ_2 115 138 IPR003591 -
Seca4g04510 964 SMART LRR_typ_2 191 215 IPR003591 -
Seca4g04510 964 SMART LRR_typ_2 265 288 IPR003591 -
Seca4g04510 964 SUPERFAMILY L domain-like 331 439 - -
Seca4g04510 964 ProSiteProfiles Protein kinase domain profile. 618 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04510 964 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Seca4g04510 964 CDD STKc_IRAK 624 894 - -
Seca4g04510 964 FunFam receptor protein kinase TMK1 696 913 - -
Seca4g04510 964 MobiDBLite consensus disorder prediction 485 501 - -
Seca4g04510 964 FunFam Receptor-like kinase TMK4 27 326 - -
Seca4g04510 964 Pfam Leucine rich repeat N-terminal domain 331 369 IPR013210 -
Seca4g04510 964 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Seca4g04510 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Seca4g04510 964 MobiDBLite consensus disorder prediction 457 501 - -
Seca4g04510 964 MobiDBLite consensus disorder prediction 462 484 - -
Seca4g04510 964 Gene3D Phosphorylase Kinase; domain 1 580 695 - -
Seca4g04510 964 FunFam receptor protein kinase TMK1 580 695 - -
Seca4g04510 964 Gene3D Transferase(Phosphotransferase) domain 1 696 909 - -
Seca4g04510 964 Pfam Protein tyrosine and serine/threonine kinase 621 892 IPR001245 GO:0004672|GO:0006468
Seca4g04510 964 PANTHER OSJNBA0070M12.3 PROTEIN 10 964 - -
Seca4g04510 964 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Seca4g04510 964 Gene3D Ribonuclease Inhibitor 331 457 IPR032675 -
Seca4g04510 964 SUPERFAMILY L domain-like 53 308 - -
Seca4g04510 964 SUPERFAMILY Protein kinase-like (PK-like) 597 894 IPR011009 -
Seca4g04510 964 MobiDBLite consensus disorder prediction 937 964 - -
Seca4g04510 964 SMART serkin_6 618 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04510 964 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04510 Seca-Chr4 82812622 82816855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04510 70 894 Receptor kinase-like Gene Family AT5G49660 28.476 6.15e-79 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca4g04510 PK_Tyr_Ser-Thr 9.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04510 - - gmx:100815045 1518.06