Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04503 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGCGGAGCTTTTGGAGCTGCTATTCTTGTTAATCACAAGGCCGAGAAAAAGAAATATGTGTTGAAAAAAATCAGGCTTGCGAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATCCAGCACCCTTATATTGTGGAATTCAAGGAGGCGTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAACGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTATTGTTGGCAGTAGAATACCTGCATGGAAATTTTGTTTTACATCGAGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTGGGTGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCATATGGATTCAAATCTGATATTTGGTCACTAGGATGCTGTGTATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCTATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGAGCATGCTGAGAAAAAATCCTGAACATCGGCCTACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAGTCCTCCAACAGCGTGTTCTCCTCAAAAACCAATTTCTGCTGTCAACGATCCTCGAAAAAATATGGCTGAAAGTCAAAACAGTAACAGTTCAAGTAGTGACAAAGATAGTTTGATGCCCAGTGAGAGAAACATTGCAACATCAGTACCAAGGTGTGATAACAAAGCCACTGAGACGGATCTTGCATCATTTGATGATGATGGCTCGGAGCATCCCCTGCCTAGTGAGGAAGAAAATGGCTCTAGTAATGCCCATGCCAAAACAGCTGAGCATGAGGTGATGAAACCATTTCATAATGAACAGTGTTCTAATATTGAATCTAAGCAGCCAAAAACAATCAGAAATATAATGATGGCATTGAAAGAGGGAAAAGTTAGAGAAGCAACTTCTCCGATGAGGGGAAATCGGATAAAGGCCGGTGGTGTATCAACACAGAAAATAAATACAGAGACATTGTCTAAATTGCCTAAACCCACTATTATTGCTCCTGGTTTGAAGCCTAATTTAGAGTCACCAACTGTTTCACATGCAAAGGCAACCCCTGATTCTGGCAAACGAATACAGGGATCGCATCATTCAAAGCATCAGCAGTTACTTATGACAGAGCCCTCACCAAAAGTTAAACCCAGACATGATTTGACTCCACCATCTGGCTTTATCAAACAAGTAGAAGGAGATGGAGTTCCTCCCAAGCCAAGGCAAAGGACTCCCCCAAGCTTACTTAGACGGCCTTCATTTTCAGGACGAATGAGGCTGGCTGGATTTGATGTCCCAAATGCAGCAAATGATACCGGGAAGCTAGGTCCATCTAAAATAGTCCAGGAGCCTGAGATGAGCCATTATCAATTGACAAATGGCAATGCACCACATATTTCTAGACAGATTACTAGAGAACCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGTAATTCTGCTTCATCTTCAGTTTCTATTCAAGGATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAGCATATGCTTCCTGATCATGAGAGTGTGACCCACATTGTCGGTGTGGAATCATGTCCAGAAAGCAGCCCATCTACAACCTGTTCACGGTGTAATATGGTTGAAGAAGTGTCTGAGGAAACCTGTGAAGTCAACCTGAATTTTCAGGATACTATTAGTAGTAATGAAAAAGCGAGTTCCAGTTTAACTTTGGATCACCTTGTTGAAGATTCTAAGGTAATGTTTGCTTCGGAAGATAGTCTTCCCATAAATCAGACAACAGTATCTACTGTCTCCAGGTGTGATAATAGACCTGTAGACCCCCCTGCTGAAGCCACCAAAGAAATCAAAGATCTTCAAGATATTTCTAAGGAAATGGCTTTAACCAAGTCTCTCAAACATCAATCCCCAATTTCTGGAGAAAAGTCTGTTTGTGAAGAGGTTAGTCCAGTAAGCAAACTCAATAATAGCCCTGATATAGTTAGCCAGCCAAAACATGCGTGTAAGTCCACTGGTGATGACAAGTTTACAGTGAGGGAGCGACTCTCATCTGTCGCTGAAACTGCTCCTCTGATTACCACTACTAAAATAACAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTCTTGCAGAATCCAGCACCAGAAAGGCCGGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTCATCCATGTTATACGCCATAGTAGTTATCGTGTTGGAAGTGAGCAGCCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAATTTATCAATGTTGTGAGGGATGATTTAGAAATGAGAAACATAAGCTCTCCTTTGGCGCATAAATCTTCAAGTTGCTCCGAAGCTGCAAGCTTAAAATCAAATGTTTCTGATCAGTTGGAAATGAGAAACAGTAGCACCCCTCCTACCCTTAAATCTTCAAGCTTCTCTGATGCTTTGAGCTCAAAATCAAGCATTTCTGATCACCCTGGTATTAAGGAACAAGATGTAAGTAACCCTGTTTCTTTAGTTTCAGAATCTGATTCCACCGAGCTCAGTAAATGTAACACTCGAACAACTGAAGACAAACCACCAGCAAAGGAAGCACTGGATGTGAAATCTTTCAGGCAGAGAGCAGAAGCACTTGAAGAGCTCTTGGAATTGTCAGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTAAAGCCTTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCAATTTGGCTAGCCAAGAGTCTTAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCAGTTCATGA 3141 0.4238 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFTQLLLAVEYLHGNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKSMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFSPPTACSPQKPISAVNDPRKNMAESQNSNSSSSDKDSLMPSERNIATSVPRCDNKATETDLASFDDDGSEHPLPSEEENGSSNAHAKTAEHEVMKPFHNEQCSNIESKQPKTIRNIMMALKEGKVREATSPMRGNRIKAGGVSTQKINTETLSKLPKPTIIAPGLKPNLESPTVSHAKATPDSGKRIQGSHHSKHQQLLMTEPSPKVKPRHDLTPPSGFIKQVEGDGVPPKPRQRTPPSLLRRPSFSGRMRLAGFDVPNAANDTGKLGPSKIVQEPEMSHYQLTNGNAPHISRQITREPQKAFERSSKGMQTDSSNSASSSVSIQGCELADDATTFIDMREHMLPDHESVTHIVGVESCPESSPSTTCSRCNMVEEVSEETCEVNLNFQDTISSNEKASSSLTLDHLVEDSKVMFASEDSLPINQTTVSTVSRCDNRPVDPPAEATKEIKDLQDISKEMALTKSLKHQSPISGEKSVCEEVSPVSKLNNSPDIVSQPKHACKSTGDDKFTVRERLSSVAETAPLITTTKITSQKVLQEKGTVLQNPAPERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNISSPLAHKSSSCSEAASLKSNVSDQLEMRNSSTPPTLKSSSFSDALSSKSSISDHPGIKEQDVSNPVSLVSESDSTELSKCNTRTTEDKPPAKEALDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS. 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04503 1046 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Seca4g04503 1046 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 272 360 - -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 570 597 - -
Seca4g04503 1046 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04503 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca4g04503 1046 MobiDBLite consensus disorder prediction 292 327 - -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 431 518 - -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 578 597 - -
Seca4g04503 1046 Coils Coil 983 1009 - -
Seca4g04503 1046 CDD STKc_Nek 7 262 - -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 886 961 - -
Seca4g04503 1046 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04503 1046 MobiDBLite consensus disorder prediction 758 778 - -
Seca4g04503 1046 SUPERFAMILY Protein kinase-like (PK-like) 4 316 IPR011009 -
Seca4g04503 1046 MobiDBLite consensus disorder prediction 331 347 - -
Seca4g04503 1046 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca4g04503 1046 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04503 1046 Gene3D Transferase(Phosphotransferase) domain 1 90 333 - -
Seca4g04503 1046 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Seca4g04503 1046 MobiDBLite consensus disorder prediction 886 973 - -
Seca4g04503 1046 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04503 Seca-Chr4 82560264 82566795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04503 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 2.82e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca4g04503 Pkinase 3.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04503 K08857 - gmx:100784761 1616.67