Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04499 ATGGGTGTGCCAGCTTTTTATAGATGGTTGGTTAACAAATACCCGAAGGTGGTTGAAGACGTGAACGCCACTACCATGGCAAACCCAAATGATGGAGTGGGTTATGATAACTTGTATCTTGACATGAATTCCATTATCCACCCCTGTTTTCACCCCGAGGAGGATCCCAACAGTCCACCACCGCCAACAACGTTCGATGAAGTGTTTACGAATATCTTCAACTACATTGATGGACTTGTGAGCATCGTTAGGCCTCGGAAGCTATTGTACATGGCTATTGATGGAGTAGCCCCACGCGCCAAAATGAACCAACAAAGATCGAGGCGTTTCAGAACTGCTAAGGACGAAGAAATGCGTGAAGCCGAGGAAGACAGGCTTAGGAAGCAATTTGAATTGGAAGGAAAACAAGTTCTTCCTAAACAAGAATCTCAAGTGTCAGATTCTAACACCATAACACCGGGAACAGAGTTCATGTACGAACTCTCAAAGGCCCTTAAAACCTACATCTCTTCAAGGATAGCCTCTGATTCGTTATGGAGGGATTTTATGGTGATTCTCTCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGGTTATGTCATACATACGCAAACAGCGTAGCCTTCCTGGATATGATCCAAACACTAGCCACTGCTTATATGGTTCGGACGCGGATCTAATAATGCTTGGAATGGCTACTCATGAGCCACATTTTTCAATCTTAAGAGAGGACGCTCTTATTCAAGAGCAGAAGCAACAGATTGCTGCTAGGCCTTTCAAGTTTTTGCATATTTGGCTATTGAGGGAATATCTTGAGATAGACATGAAGATTCAAGATCCTCCCAAAAATTGCAGCATTGATTTTGAGCGGATAATTGATGATTTCGTCTTCATGTGTTTCTTTGCTGGAAATGATTTTCTACCCCATATGCCATCTTTGGAAATTCACGAGGGTGCTATTGATTTACTGATGACAGTTTACAAGAAACAATTCAATAAACTTGGAGGATATCTTGTGGACATCACAAGGGTTGGGGAGAAACATGCTGCATTTGTCATGTTATCTAGAATTGAAAAATTTATACTTATGGTTGGTACATATGAAGAGAAAATCTTCAATAAAAGATCCGATATTAGAGACCGGAAATTGAGAAGGATTATTAGTGATTTTGAGCACTCAAAACAGGAAGAACAGGATGCAGTTCGTTGCTCAGATTTTGACAATGAAAGTAGTTCGCATTGTTCTCTTCTCATTAAGAAAGCCCCGGCTTCCCAAGGTTCGGCTGCTGAAAACACAAAGGAGTTAAAAGAGGAATTAAAAAAATGCATTAGAGAAAAAGGTGACTTGTTTAAGAGTGGAGAATTCCTAATTGACAAGATAAAATTGGGAACTGCTGGTTATAAAGAAAGATATTATAAAGAGAAGTTTTCAGTGGAGGGCTCCACTGACATTGAGTGCAAAAGAAAAGATATAGTCCAGAAGTACACTGAGGGATTGTTGTGGGTTCTTCAGTACTATTTTTCAGGAGTTCCTTCATGGACGTGGTTTTATCCATATCACTATGGTCCATTTGCTTCAGACTTAAGGGGCATGGCTCAGATCAGAGTAAATTTTGAGAAGGGCACCCCGTTCTTACCTTTTGATCAACTTTTAAGTGTTCTGCCCCCAAGGAGTGCTTATGCACTTCCAGAAGCCTATGCTGAGTTAATGCTGGATGAGCAGTCCAGAATATACGAGTGGTATCCTCAGGATTTTGAAGTTGACATAGAAGGAAAGCGCTTCATGTGGCAGGGTGTCTGCAAACTGCCATGGATAGAGGAAAAACGGCTTTTGACTGAAACCAGAGAACTCAAAAATGGATTATCTGAAAATGAAAAGATAAGAAATTCAATCAAAGTTGATAGCTTGTTTTTTAGAAGCACTAGCAAGTTGGGAGAGAAAATTTGCTCCCTTTCTCAGGAGTCAAACGTTAACCCATCTTTCATGTTACATACGAGTATAAGTGACGGGATTGGAGGTACCATAAGTCTTTACGATGAATGTGTTGAGAAGCCTTGCTTGGGGATAGAGACATGTGACAACAAACAAGAAGATCATGTCATATGTGTCTATTACGAGCTGCCTGCTGGGGATAGTAGTCATATTCCTCATTTGCTATCAGGTGTAGAATTTCCAGATAAGACAATATTTGACAATGACATAATGGAAACAGTTCTCTGGCATGAAAGTCAGAGACACGGTCGTTTTGATAGGGTGCCGATTCAAGATAAGTGGAGGAGTACAAATAGTGGTATAAAGTTTTCCCCAAATGCAAATACTCAACATAGAAGTTTTTCATTAAATACACCTACTGTGACTGTTCCTGAAGTGACATACAAAGGTGCTGGTGTTGGATGGGGTTCTTCAGGTAGAGGGAAGCCAGGCAACAGTCCTAACATGAAAAGAAATGATACCATGTCAAATGATAAAATGACATCCTTCTCTCTTTCTCATAAACAATTTAAGGATGCAGGATCTTATTCTTATCATCAAGTTTCACAATCTGAGACTATTATGCCTTTTGGAAGGGGACGTGGTAGGCTTCAACCGAATTTCAATAATGTAAATTCATGGAGGGGTGTTTCTTCTTCTAACAGCTCACTGCGGCCTCAATGGAGTGGCATTTTGGATAGTCCTCAAAATGACGTGGATTTGCATTATCTTTTGTTACTTTATAGGAGTGAAATGCCTGGTGCTGCAACTTCTTTTCTTATAGTTACTAAATACTTGTTGTCATTAGATCATTATAGCTATTTGTTTTTGACGCTGCTATATGACATGAGAATTAATTGTCAAGAAAGACTATTGAAGCGGAAGAATGAAGCAGCCGATTTTGAAGCTGATTCAGGTGATAGGATGACTCATGGATCCACTGATGCAGCTAATAGTCCTTTTCAGACGCCTGTATCAGGAAAGATGGGGAAGGGGGGCAAATCCTCTAGATTGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTTTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTCGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATACGATATAACAAATGTTCTTGAAGGGATTGGCCTCATAGAAAAGAAGCTCAAGAACCGGATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGTCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGTTTGGATTCCATGCGTTTGCTGATTCTTTATTGAATAATTGCAATGTTTCTCCACACGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTTCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGATGTTGCACCCAAATTTCCATCTAGTCCAGAATTTCACAAGCATCAATCAACTGTGGTCCCAGAGGATAGAGGGAAGGACACAGAGGTGCAGGAACAAGATGTTCATGGACCTAGTTCGGATTTTACTTCCTCTCAGGATTTTGTGAGTGGAATCATGAAGATTGTTCCTTCTGATGTTGCTAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGACACACTTCAAGAAGATTATTGTATGACTCGTGAGCAAACTACAACTCCAAGTCATCCTTCGAATGTAGGTAAAGTGCCTTCTGCATCTAATCCTACTGGAGGTTCCATGAAGACAATTTCTCAATGTTTCTCCAAGAAGCCTGGCCGAGGAACTGAGTGGCCAGTCAACTGGCTCATTGTACAGTTAATATTACATAGTCCAAGCAACCTTGTACTTCAGACAAAAAATCCTGCGGCTTTGGTGAACCCATCTTTGTATATTATTGTAAGTCTTGGCTTTCTAGAGCACTTAGCTCGATGTCTGTGTAGCAAGCAATAA 4176 0.4076 MGVPAFYRWLVNKYPKVVEDVNATTMANPNDGVGYDNLYLDMNSIIHPCFHPEEDPNSPPPPTTFDEVFTNIFNYIDGLVSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRTAKDEEMREAEEDRLRKQFELEGKQVLPKQESQVSDSNTITPGTEFMYELSKALKTYISSRIASDSLWRDFMVILSDANVPGEGEHKVMSYIRKQRSLPGYDPNTSHCLYGSDADLIMLGMATHEPHFSILREDALIQEQKQQIAARPFKFLHIWLLREYLEIDMKIQDPPKNCSIDFERIIDDFVFMCFFAGNDFLPHMPSLEIHEGAIDLLMTVYKKQFNKLGGYLVDITRVGEKHAAFVMLSRIEKFILMVGTYEEKIFNKRSDIRDRKLRRIISDFEHSKQEEQDAVRCSDFDNESSSHCSLLIKKAPASQGSAAENTKELKEELKKCIREKGDLFKSGEFLIDKIKLGTAGYKERYYKEKFSVEGSTDIECKRKDIVQKYTEGLLWVLQYYFSGVPSWTWFYPYHYGPFASDLRGMAQIRVNFEKGTPFLPFDQLLSVLPPRSAYALPEAYAELMLDEQSRIYEWYPQDFEVDIEGKRFMWQGVCKLPWIEEKRLLTETRELKNGLSENEKIRNSIKVDSLFFRSTSKLGEKICSLSQESNVNPSFMLHTSISDGIGGTISLYDECVEKPCLGIETCDNKQEDHVICVYYELPAGDSSHIPHLLSGVEFPDKTIFDNDIMETVLWHESQRHGRFDRVPIQDKWRSTNSGIKFSPNANTQHRSFSLNTPTVTVPEVTYKGAGVGWGSSGRGKPGNSPNMKRNDTMSNDKMTSFSLSHKQFKDAGSYSYHQVSQSETIMPFGRGRGRLQPNFNNVNSWRGVSSSNSSLRPQWSGILDSPQNDVDLHYLLLLYRSEMPGAATSFLIVTKYLLSLDHYSYLFLTLLYDMRINCQERLLKRKNEAADFEADSGDRMTHGSTDAANSPFQTPVSGKMGKGGKSSRLTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQSEVENLTMEERRLDEQIRFGFHAFADSLLNNCNVSPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPEFHKHQSTVVPEDRGKDTEVQEQDVHGPSSDFTSSQDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELDTLQEDYCMTREQTTTPSHPSNVGKVPSASNPTGGSMKTISQCFSKKPGRGTEWPVNWLIVQLILHSPSNLVLQTKNPAALVNPSLYIIVSLGFLEHLARCLCSKQ. 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04499 1391 Coils Coil 1042 1062 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 1210 1228 - -
Seca4g04499 1391 SUPERFAMILY E2F-DP heterodimerization region 1105 1183 IPR037241 -
Seca4g04499 1391 Pfam Xrn1 helical domain 287 735 IPR041412 -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 960 1022 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 995 1022 - -
Seca4g04499 1391 Gene3D - 1020 1093 IPR036388 -
Seca4g04499 1391 SMART E2F_TDP_2 1026 1091 IPR003316 GO:0005667|GO:0006355
Seca4g04499 1391 SUPERFAMILY "Winged helix" DNA-binding domain 1026 1089 IPR036390 -
Seca4g04499 1391 Gene3D - 1142 1183 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 806 822 - -
Seca4g04499 1391 PANTHER 5'->3' EXORIBONUCLEASE 1 1018 IPR027073 -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 969 983 - -
Seca4g04499 1391 Gene3D - 533 632 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 1199 1237 - -
Seca4g04499 1391 Pfam E2F/DP family winged-helix DNA-binding domain 1028 1091 IPR003316 GO:0005667|GO:0006355
Seca4g04499 1391 Pfam XRN 5'-3' exonuclease N-terminus 1 245 IPR004859 GO:0003676|GO:0004527
Seca4g04499 1391 CDD PIN_XRN1-2-like 38 272 - -
Seca4g04499 1391 FunFam E2F transcription factor 1 1020 1093 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 799 822 - -
Seca4g04499 1391 MobiDBLite consensus disorder prediction 1298 1322 - -
Seca4g04499 1391 Coils Coil 1104 1124 - -
Seca4g04499 1391 Gene3D - 1 137 - -
Seca4g04499 1391 Gene3D - 138 348 - -
Seca4g04499 1391 Pfam E2F transcription factor CC-MB domain 1143 1182 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04499 Seca-Chr4 82491401 82503825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04499 979 1306 E2F-DP Transcription Factor Family AT5G22220 55.438 1.55e-108 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca4g04499 XRN_M 1.2e-162 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04499 - - gsj:114379404 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04499 4 82491401 82503825 Seca4g04499 4 82491401 82503825 ECH