Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04497 ATGTCTTCCAACAAGAAAAATCTTCTGAAAACAGTATTCACAGCTAATGGAAGCTGTGGCTGTGGCAAAAGCAAAGCAATTGAAGTACATGAACCCACCCCAATACTCAAAAACTCCAACTTTCACCAAAAGACAAATCCAAGTAGCAAGGCTTCCTCCACCACCACTTCAAGGGAACGAAACGGTGCTCTCTCCATGGATGATGATGATGATGATGATGATTTCACCTCCACCACCATCTCTGAACCTGAGACCATAACTACTCATCTTGACCATAACATCAAGAGCCCCATGAACTACTCTGTTCCAAAACAGAGTCCACTCGTAGACAGTGTGGCAATTGAGAAGGATTCAGAGGACCCATATCATGATTTCAGGCATTCTATGCTTCAAATGATATTTGAAAAGGAGATTGACTCAGAAGATGATCTTCAAGATCTTCTCCAATGCTTTCTTCACCTCAATGCTACATGTCACCACCATGTCATCCTTAAAGCCTTCAAGGAGATCTGTGAAGAGGCATTCCCTGATAAGGTTAGTACTAGTGCTACTCCTGTTGTGGCTGAACCTTCTCCTTCTCACAGGAACATCATTCGAAAGAGTCACTGA 609 0.4286 MSSNKKNLLKTVFTANGSCGCGKSKAIEVHEPTPILKNSNFHQKTNPSSKASSTTTSRERNGALSMDDDDDDDDFTSTTISEPETITTHLDHNIKSPMNYSVPKQSPLVDSVAIEKDSEDPYHDFRHSMLQMIFEKEIDSEDDLQDLLQCFLHLNATCHHHVILKAFKEICEEAFPDKVSTSATPVVAEPSPSHRNIIRKSH. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04497 202 MobiDBLite consensus disorder prediction 35 90 - -
Seca4g04497 202 Pfam Transcriptional repressor, ovate 118 173 IPR006458 -
Seca4g04497 202 ProSiteProfiles OVATE domain profile. 114 173 IPR006458 -
Seca4g04497 202 MobiDBLite consensus disorder prediction 181 202 - -
Seca4g04497 202 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 42 174 IPR038933 GO:0045892
Seca4g04497 202 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Seca4g04497 202 MobiDBLite consensus disorder prediction 36 61 - -
Seca4g04497 202 NCBIfam uncharacterized plant-specific domain TIGR01568 112 171 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04497 Seca-Chr4 82485031 82485639 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca4g04497 Ovate 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04497 - - gmx:102660065 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04497 4 82485031 82485639 Seca4g04497 4 82485031 82485639 ECH
Seca4g04497 4 82485031 82485639 Seca4g04497 4 82485031 82485639 PCT