Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04464 ATGGAAGATCTACCACCTGGTTTTCGCTTCTTCCCAACTGAAGAAGAGTTAGTTGGCTTCTACCTACACAACAAGCTAGAAGGGCAAAGCAACTCCATAGAAAGAGTTATCCCAGTCATTGATATCAATGGGGTAGAGCCGTGGAACCTTCCAACACTTGCAGGGGCACTTTGTCGAGGGGACAAGGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGGGAAGCTAGGGGAGGCAGACCCAACAGAACCACAGCTTGTGGGTATTGGAAAGCAACAGGTTCTCCTGGATACGTTTACTCTTCTGACAACAAAGCCATTGGGGTGAAGAAAACCATGGTCTTCTACAAAGGGAAAGCACCTACTGGAAGGAAAACTAAATGGAAGATGAATGAGTACAAAGCCATCCAAGTCTCTAATCCTCAATCAAACACAGCAACCCCTCAGTTGAGGAGGGAATTCAGCTTGTGCCGGGTCTATGTCATATCGGGAAGCTTTCGAGCATTTGATAGACGCCCATTAGAGAAGGAAAGAGTACTAAAATCGCGGGTTGGGAACACATTTGCTGCCACATGTACTACTGAGCAGGCTGCTAGCAGATTGGATGGATCAAGTTCATCTCAAACTTCCCACTTAAGGGGACTCCATAGTGTTCATCTGCCAGAGGCTGTTGTCGCCGGATGA 684 0.4708 MEDLPPGFRFFPTEEELVGFYLHNKLEGQSNSIERVIPVIDINGVEPWNLPTLAGALCRGDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKAIGVKKTMVFYKGKAPTGRKTKWKMNEYKAIQVSNPQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLEKERVLKSRVGNTFAATCTTEQAASRLDGSSSSQTSHLRGLHSVHLPEAVVAG. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04464 227 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Seca4g04464 227 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Seca4g04464 227 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Seca4g04464 227 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Seca4g04464 227 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04464 Seca-Chr4 81892452 81893599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04464 2 206 NAC Transcription Factor Family AT5G22380 63.158 1.13e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g04464 NAM 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04464 - - cam:101497878 357.066