Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04437 ATGCCACGGGGAAAGTCAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAGTTGAATCTGATGAGAAAATCAATTTTGATGAGGCAAATGATCCTGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGTGGAAGAAATAGAAGAGGTGGTTGAAGAGGTGGAAGAAGAGGAGGAGGAACCAGAGGAGGTAGAAGTAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAAGAAGTGGAAGAAGATGATGCCATCCAAAATCATAGCAGTGATGAGGCCAAGGTGGAAGATAAGAATGAGAAAAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACGGGTCTGAAGTTTACATTGGTGGCATTCCTCACGATGCCTCAACTGAGGATTTGAAAGCCTTTTGTGAGCATATTGGGGAAGTTGTAGAGGTTCGCGTAATGAAAGGAAAAGTTTATTCTGAGAATAAGGGCTTTGGTTTTGTGACTTTTAGAAATGTGGAATTGGCATCTAAAGCCATTGAAGAGCTTAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCGACATCTCAAGCAAAAAACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGCGATGAAGATCTGAGGAAGATTGTGACTGAGATTGGACCCGGTGTTACCACTGTAGAACTAGTCAAGGCTGTGAATAACACTAGCAATAACCGTGGCTTTGCTTTTATCGACTATCATAATCATTCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGGCAATGCTCCAACAGTGAGCTGGGCTGACCCTAAACATTCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAATCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATCGGCTTTGTACATTTTGCAGAGAGATCAAATGCTATGAAAGCACTTAAAAACCCTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGTGTATCAAATACACAGAAGCAAGGATTGCTTCCAAGTTATCCACCACGTGTTGGTTATGGTTTGGGTGGTGGTGCCTATGGTGCACTTGGGGCAGGATATGGTGCTCCAGGTCTTGCACAGGTGACTTGTGCATTTCTGTGCTTGTTTCCAGACATGAAATTATTCTTGTATGGTCTTCATTTTGTTTCAACATAA 1377 0.4198 MPRGKSNSSSVAKPSEPEKPVESDEKINFDEANDPEEAMEEEIEYEEVEEEEEEEEEEEVEEIEEVVEEVEEEEEEPEEVEVEEEEEEEEEEEEEEEEVEEDDAIQNHSSDEAKVEDKNEKKKHAELLSLPPHGSEVYIGGIPHDASTEDLKAFCEHIGEVVEVRVMKGKVYSENKGFGFVTFRNVELASKAIEELNNTEFKGKKIKCSTSQAKNRLFIGNVPRSWGDEDLRKIVTEIGPGVTTVELVKAVNNTSNNRGFAFIDYHNHSCAEYSRQKMMSPTFKLGGNAPTVSWADPKHSDSSAASQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNPERYELEGQILECSLAKPQADQKSGVSNTQKQGLLPSYPPRVGYGLGGGAYGALGAGYGAPGLAQVTCAFLCLFPDMKLFLYGLHFVST. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04437 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 297 IPR000504 GO:0003723
Seca4g04437 458 Gene3D - 49 215 IPR012677 -
Seca4g04437 458 SUPERFAMILY RNA-binding domain, RBD 306 417 IPR035979 GO:0003676
Seca4g04437 458 Coils Coil 36 107 - -
Seca4g04437 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Seca4g04437 458 SMART rrm2_1 136 209 IPR003954 GO:0003676
Seca4g04437 458 Gene3D - 216 296 IPR012677 -
Seca4g04437 458 SMART rrm1_1 310 383 IPR000504 GO:0003723
Seca4g04437 458 SMART rrm1_1 216 293 IPR000504 GO:0003723
Seca4g04437 458 SMART rrm1_1 136 209 IPR000504 GO:0003723
Seca4g04437 458 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 216 296 - -
Seca4g04437 458 CDD RRM_SF 137 209 - -
Seca4g04437 458 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 412 - -
Seca4g04437 458 MobiDBLite consensus disorder prediction 106 129 - -
Seca4g04437 458 MobiDBLite consensus disorder prediction 1 129 - -
Seca4g04437 458 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 298 407 - -
Seca4g04437 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Seca4g04437 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Seca4g04437 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Seca4g04437 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 278 IPR000504 GO:0003723
Seca4g04437 458 SUPERFAMILY RNA-binding domain, RBD 132 300 IPR035979 GO:0003676
Seca4g04437 458 Gene3D - 298 423 IPR012677 -
Seca4g04437 458 MobiDBLite consensus disorder prediction 29 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04437 Seca-Chr4 81426928 81433605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04437 142 411 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 1.19e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04437 K13161 - gmx:100806658 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04437 4 81426928 81433605 Seca4g04437 4 81426928 81433605 ECH