Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04432 ATGTACCAACATCAAGGAAAGAACATCCATTCTTCTTCCAGAATGTCAATCCCTTCTGAAAGGCACATGTTGATTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTCCTCTCAACTGATGCTAAGCCTAGATTGAAGTGGACACAAGATCTTCATGGCAGGTTCATAGAAGCTGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGCCATCTGCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGTAACAACGTGATACACAAAATCACAAATCCAGGTGCAGCAACAGGAGAAAGACTCTCTGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCTCCTCAGTCTAACAAGTTTTGTACTAATATTCATTGCCCTTGCAGCAGAGATTTACACATAAGTGAGGCACTGCAGATGCAGATAGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCCCAAGGAAAATACCTACAGTCTGTGCTAGAGAAAGCTCATGAAACGCTTGGTAGACAGAATTTGGGAATGGTAGGACATGAAGCTGCTAAAGTTCAACTTTCAGAACTAGTGTCCAAAGTATCCACTCAGTGCCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTGCAAACACAAAACAACCAGCCAACTGATTGCTCTATGGACAGTTGTCTCACATCATGTGATGGATCACAAAAAGAGCAAGATATACAAAATGGGAGGATGATGTTAAGACCCTTCAATTGCCACACATTCATGGAACAAAAGGAAGTCATAGAGACTCCCAATCCCAACCTACAGAACTCTGACCTCAAGTGGTGTGATCCAGTGAAAAAGAACACCTTTCTTACCCCATTAAGCAAGAATCCTGAAACAAGAAGTTATGTTGTAGAAAGAAGTCCAAGCAACTTATCTATGAGCATTGGACTAGAAGGACAAACAGAGAACGGGAGCAGTATGTATCCTGAGAAAATAATCACAGGGAGACAGACAGATGGTGAATTCCAACACACAACAGAATCAATGAAACCAATGACTGGAAAGGGTTCTCAAGATTATAGGTTTCCTTCTTACTTTGCATCAACAAAACTAGACCTAAGAACTGAAGATAATGGGGCTGCAGGGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTGA 1275 0.418 MYQHQGKNIHSSSRMSIPSERHMLIQTGNGSGDSGLVLSTDAKPRLKWTQDLHGRFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVIHKITNPGAATGERLSENNGTHVNNLNLAPQSNKFCTNIHCPCSRDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQSVLEKAHETLGRQNLGMVGHEAAKVQLSELVSKVSTQCLNSAFSELKELQGLQTQNNQPTDCSMDSCLTSCDGSQKEQDIQNGRMMLRPFNCHTFMEQKEVIETPNPNLQNSDLKWCDPVKKNTFLTPLSKNPETRSYVVERSPSNLSMSIGLEGQTENGSSMYPEKIITGRQTDGEFQHTTESMKPMTGKGSQDYRFPSYFASTKLDLRTEDNGAAGSCKQLDLNGFSWS. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04432 424 FunFam Myb family transcription factor 42 100 - -
Seca4g04432 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
Seca4g04432 424 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Seca4g04432 424 Coils Coil 158 178 - -
Seca4g04432 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Seca4g04432 424 Pfam MYB-CC type transfactor, LHEQLE motif 156 202 IPR025756 -
Seca4g04432 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 283 IPR044848 GO:0003700
Seca4g04432 424 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
Seca4g04432 424 Gene3D - 42 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04432 Seca-Chr4 81266689 81270063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04432 75 424 G2-like Transcription Factor Family AT3G04030 49.580 4.64e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g04432 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04432 - - gmx:100810396 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04432 4 81266689 81270063 Seca4g04432 4 81266689 81270063 PCT