Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04421 ATGGCGAGCCAAAGAATAGGAGAAACTGGTTTGTCTGAATCAGCGCCTTCAAGTCACCATGTCCCTTGTGGAGTTCTTCATGGAATTAGTACCCCAGCATCAGGCTTAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTGCAAGGAATTAAGATTAGAAATGATGAATCCAAAGCACCTTTATTCACAGGCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGTAGTAGCCTCTCTCACTTCTCCATCTTTGACCAATCCATATGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTTTTTCAAGCAAAACGGAGCTTCAGTTTGAAACAGATTCTCCCATAAGTATAAAAGCATCTTCTTCAGATCATCAGGCTTTTGATCAGCATCATCACCTGCAGCTTCAACAGATTCAACAGGAGACTGCAATTGATGCATCAAGAACAGACCCTTCATCACAGAATCAACCAGAAGCTAAATCACCTCAAGTAAAGCAGAGGAAGGGAGCTGGTTCCACATCAGAAAAGACACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTAAGGAAAAAGGCTTATGTGCAGCAATTAGAAACAAGTAGATTAAAGCTCACCCACCTTGAACAAGACCTTCAAAGAGCGCGTGCTCAGGGACTTTTCTTGGGTTGTGGTGTTGCTGGTGGCAATATAAGCTCTGGAGCTGCAATGTTTGACGTGGAGTATGCAAGGTGGTTAGAGGATGATCAGCGGCACATGGCGGATCTCCGGACGGGGCTGCAGGCGGCTATGTCGGACAATGAACTCCGCGTGATAGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTCAAAGGGATGGCTGCAAAATCAGATGTATTTCACCTTATTAATGGTATCTGGACTTCCCCAGCTGAACGATGCTTCCTCTGGATAGGTGGTTTTAGACCCTCAGAGCTCATCACAATGTTGATACAACAGTTGGAGCCCTTAGCGGAGCAGCAAATAGTGGGTATATGTGGGCTAAGGCATTCGTCACTACAAGCAGAAGATGCACTTTCTCAAGGCCTTGAACAACTTCAACAGTCTCTTGTTGACACCATCGCCGGCGGGCCCATCGTTGACGGCGTGCAACAAATGGTCGTCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTCTCCGTCAGGCTGATAATTTGAGGCAACAGAGTCTTCACCAATTATGTAGAATACTAACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGTCGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAACTTGATCAACGATGATAACTCATGCCAAACAACAACGGAATTACAAATGGTTCAACCTTCTCAGAGTCATTTCTCCAATTTCTGA 1524 0.4554 MASQRIGETGLSESAPSSHHVPCGVLHGISTPASGLINQGSAFDFGELEEAIVLQGIKIRNDESKAPLFTGRPAATLEMFPSWPMRFQQTPRVVASLTSPSLTNPYGGSKSGGESTDSGSGVNTFSSKTELQFETDSPISIKASSSDHQAFDQHHHLQLQQIQQETAIDASRTDPSSQNQPEAKSPQVKQRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLTHLEQDLQRARAQGLFLGCGVAGGNISSGAAMFDVEYARWLEDDQRHMADLRTGLQAAMSDNELRVIVDGYLSHYDEVFRLKGMAAKSDVFHLINGIWTSPAERCFLWIGGFRPSELITMLIQQLEPLAEQQIVGICGLRHSSLQAEDALSQGLEQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFLRQADNLRQQSLHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRENLINDDNSCQTTTELQMVQPSQSHFSNF. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04421 507 Pfam Seed dormancy control 285 360 IPR025422 GO:0006351|GO:0043565
Seca4g04421 507 SMART brlzneu 201 277 IPR004827 GO:0003700|GO:0006355
Seca4g04421 507 MobiDBLite consensus disorder prediction 98 125 - -
Seca4g04421 507 ProSiteProfiles DOG1 domain profile. 268 476 IPR025422 GO:0006351|GO:0043565
Seca4g04421 507 MobiDBLite consensus disorder prediction 168 206 - -
Seca4g04421 507 Gene3D - 204 253 - -
Seca4g04421 507 Pfam bZIP transcription factor 204 245 IPR004827 GO:0003700|GO:0006355
Seca4g04421 507 Coils Coil 231 251 - -
Seca4g04421 507 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 203 247 IPR004827 GO:0003700|GO:0006355
Seca4g04421 507 PANTHER TRANSCRIPTION FACTOR TGA9 141 479 - -
Seca4g04421 507 FunFam BZIP family transcription factor 204 253 - -
Seca4g04421 507 CDD bZIP_HBP1b-like 205 256 - -
Seca4g04421 507 SUPERFAMILY Leucine zipper domain 205 247 IPR046347 GO:0003700|GO:0006355
Seca4g04421 507 MobiDBLite consensus disorder prediction 168 195 - -
Seca4g04421 507 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 208 223 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04421 Seca-Chr4 81141836 81150356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04421 155 507 bZIP Transcription Factor Family AT1G08320 68.732 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g04421 DOG1 7.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04421 K14431 - gmx:100101904 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04421 4 81141836 81150356 Seca4g04421 4 81141836 81150356 ECH
Seca4g04421 4 81141836 81150356 Seca4g04421 4 81141836 81150356 PCT