Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04416 ATGACGTGGAAGGACGTGGTGAATTTATGGTCGATGACACAACGGCAGAATTGGAATTCGGGATCTTGTGAATTGTTGGGGAAAAGGGGTAAGAGTGGTTCTTCTGGTGGGAAGTTCCTCTGTTTTGAGGAGAATGAGGTGGAGAAGATTGCAGGTAAAAGTGGTGGGAGCAATTTCAGTAAATGTGTTACTTTGGCAGAAGAGAAAGAAGGAAAGCAAAAAAGAAGAGGCTATAATTTAGCCTCAATCAACGATGACCTCGAAAGAGGAGCAGGGCCAAGAAGGTTTTCCTACACAGAGCTTGCATTGATTACCAATAACTTCTCCCAGGACAGGAAGTTGGGTCAAGGTGGGTTTGGAGCTGTTTACAGAGGTTACTTTGCTGATTCAGATTTAACAGTTGCTGTGAAGATAATTTCAAAGGGTTCTAGACAAGGGAAGAAAGAGTATGTAACAGAGTTGCTGCATTAG 471 0.431 MTWKDVVNLWSMTQRQNWNSGSCELLGKRGKSGSSGGKFLCFEENEVEKIAGKSGGSNFSKCVTLAEEKEGKQKRRGYNLASINDDLERGAGPRRFSYTELALITNNFSQDRKLGQGGFGAVYRGYFADSDLTVAVKIISKGSRQGKKEYVTELLH. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04416 156 Gene3D Phosphorylase Kinase; domain 1 93 155 - -
Seca4g04416 156 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 154 - -
Seca4g04416 156 SUPERFAMILY Protein kinase-like (PK-like) 92 150 IPR011009 -
Seca4g04416 156 ProSiteProfiles Protein kinase domain profile. 108 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04416 156 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04416 Seca-Chr4 81072621 81078532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04416 60 154 Receptor kinase-like Gene Family AT5G10530 55.789 1.21e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca4g04416 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04416 - - gra:105804125 128.257