Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04411 ATGGGTTTGATGGAGTGTGATATAGAGAATAAGAATCTATACCTTCATCATACCCCAACTTTCATTGAGTGGCTCAAACCATCTTCTTCCCCTTCATATCTAACTTCCACAGTGTCTTCATCTTCATCTTCATCTTCATCATCTCCTTCTTATTCTTCTTTTGCTACTCAGAGTGAGACTATCCAATTCTTTCCCATTTTGAATGGAAAGTCCTCAAAAGAGGAAGAGCATGGAATGGATGAGGTGAAAGAAGAAAAGGTGGAACAAGCAGTGACTGTGGCTTTGCACATTGGATTGCCTGTTGAACAAGATGAGAAGAAGATGGTTTTCCATGTTAAGGAAGAAGAGCCCTCAAAGAAAACCTTCCATGGCTGCACTACTTTTAACACTACTGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATTTGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGTTCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTGCCATGCTATTGTTGTGCCCAAGGTTGCAAGAACAACATCAATCACCCAAGAGCTAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAGAGAAAACATGGGACTAAACCATTCATGTGTAGGAAATGTGGGAAAACATTTGCAGTCAAAGGAGATTGGAGGACTCATGAGAAGAATTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGACTTTAAGCACAAAAGATCTCTCAAAGATCATATAAGATCCTTTGGAAAAGGTCATAACCCACATCCTTCTCTTGAAGCTAATTTTGAGGAAGAGAAGGAATGCATTACTGGATCTGATGAAGATGAGGTTGCTCATGTTTCATATGCATGA 951 0.4132 MGLMECDIENKNLYLHHTPTFIEWLKPSSSPSYLTSTVSSSSSSSSSSPSYSSFATQSETIQFFPILNGKSSKEEEHGMDEVKEEKVEQAVTVALHIGLPVEQDEKKMVFHVKEEEPSKKTFHGCTTFNTTERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEANFEEEKECITGSDEDEVAHVSYA. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04411 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Seca4g04411 316 Gene3D Classic Zinc Finger 230 293 - -
Seca4g04411 316 SMART c2h2final6 197 229 IPR013087 -
Seca4g04411 316 SMART c2h2final6 150 172 IPR013087 -
Seca4g04411 316 SMART c2h2final6 234 254 IPR013087 -
Seca4g04411 316 SUPERFAMILY beta-beta-alpha zinc fingers 141 173 IPR036236 -
Seca4g04411 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 254 IPR013087 -
Seca4g04411 316 Pfam Zinc finger, C2H2 type 150 169 IPR013087 -
Seca4g04411 316 Gene3D Classic Zinc Finger 149 172 - -
Seca4g04411 316 PANTHER ZINC FINGER PROTEIN WIP2 21 301 IPR043584 GO:0003700|GO:0010468
Seca4g04411 316 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Seca4g04411 316 FunFam Zinc finger protein WIP2 203 285 - -
Seca4g04411 316 SUPERFAMILY beta-beta-alpha zinc fingers 220 254 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04411 Seca-Chr4 80907624 80910695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04411 18 303 C2H2 Transcription Factor Family AT1G08290 56.575 7.77e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04411 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04411 - - gmx:100802773 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04411 4 80907624 80910695 Seca4g04411 4 80907624 80910695 ECH
Seca4g04411 4 80907624 80910695 Seca4g04411 4 80907624 80910695 PCT