Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04404 ATGGCGGAAGAACACAGATGCCAAGCTCCGCGCCTCTGTGCAAACAACTGCGGCTTCTTCGGCAGTCCTGCCACGCAGGATCTCTGCTCCAAATGCTACCGCGATTTGCAGCTCAAGGAACAACAATCTTCCTCCGCAAAATTGGTTCTCAACCAAACCCTAGTTCCTCCGCCGTCGGTGTTGCCTCCGGTGGTTCCGCAGCCGTCCTCTTCTTCCTCCTCTTCTCCGGTGGTGGAACCGGTCGCCGCTCCTTCTGCGCCCTCCGTTGCGGAGGAGAAAATTGGATCGCAGCCGAACCGGTGCGCGTCGTGCAGGCGGCGCGTGGGGCTGACAGGGTTCAAGTGCCGGTGCGGGTTGACTCTATGCGGGTCTCACCGGTACCCGGAGCAGCACGAGTGCGGGTTCGATTTCAAGGAGATGGGAAGGGAGCAGATCGCGAAGGCAAATCCGGTGGTGAAGGGCGAGAAGCTTCACAAGATCTGA 483 0.5983 MAEEHRCQAPRLCANNCGFFGSPATQDLCSKCYRDLQLKEQQSSSAKLVLNQTLVPPPSVLPPVVPQPSSSSSSSPVVEPVAAPSAPSVAEEKIGSQPNRCASCRRRVGLTGFKCRCGLTLCGSHRYPEQHECGFDFKEMGREQIAKANPVVKGEKLHKI. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04404 160 Gene3D - 68 156 IPR035896 -
Seca4g04404 160 MobiDBLite consensus disorder prediction 59 96 - -
Seca4g04404 160 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 160 - -
Seca4g04404 160 SUPERFAMILY AN1-like Zinc finger 92 155 IPR035896 -
Seca4g04404 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Seca4g04404 160 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Seca4g04404 160 ProSiteProfiles Zinc finger AN1-type profile. 95 141 IPR000058 GO:0008270
Seca4g04404 160 Gene3D - 1 54 - -
Seca4g04404 160 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Seca4g04404 160 SMART AN1_Zf_4 101 138 IPR000058 GO:0008270
Seca4g04404 160 FunFam Zinc finger AN1-type containing 6 75 156 - -
Seca4g04404 160 Pfam AN1-like Zinc finger 101 137 IPR000058 GO:0008270
Seca4g04404 160 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04404 Seca-Chr4 80852802 80853284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04404 1 160 C2H2 Transcription Factor Family AT3G52800 50.877 1.64e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04404 - - csv:101219115 218.009