Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04398 ATGTATAGCAATTTTAAGGAGCAGGCGATAGAGTACGTGAAGCAAGCGGTGCAGGAAGATAATGCTGGGAACTACGCGAAGGCGTTCCCTCTCTACATGAACGCGTTGGAGTACTTCAAGACGCATCTCAAGTACGAAAAGAACCCCAAGATCAAAGAAGCCATAACGCAGAAATTCACCGAGTATTTACGCCGGGCGGAGGAGATCCGGGCCGTGCTAGATGATGGTGGGCCCGGCCCGGCCTCCAACGGGGACGCCGCCATCGCCACGCGGCCCAAGACAAAGCCCAAAGACGGCGAGGGAGACGGGGAGGATCCTGAGCAGGCCAAGCTCCGGGCCGGGCTGAACTCCGCCATCGTGAGGGAGAAACCGAACGTGAAGTGGAACGACGTCGCCGGGTTGGAGAGCGCCAAGCAGGCCTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTCCCTCAGTTCTTCACTGGTAAAAGACGACCTTGGAGAGCATTCTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTTCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTCGTTCTTGCAGCAACAAATACACCTTATGCTCTTGACCAAGCAATAAGGCGGCGTTTTGATAAGCGAATATACATTCCACTACCAGATTTAAAGGCTCGTCAACACATGTTCAAGGCAAGGGCAATATTCATGATTGTGCATCTGGGAGATACTCCCCATAACTTGACTGAAGGTGATTTTGAACATCTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTTTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGAATGCAGTACAAATTACAATGCAGGAGCTTGCTGCAAAAGGACTTGCTTCTCAGATCCTTCCCCCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCTACAGTAAGCAAATCTGATCTTGACGTTCATGAGCGATTCACGAAGGAGTTCGGAGAGGAAGGTTAA 1320 0.478 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAIATRPKTKPKDGEGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKARAIFMIVHLGDTPHNLTEGDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQNAVQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04398 439 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Seca4g04398 439 SUPERFAMILY MIT domain 2 81 IPR036181 -
Seca4g04398 439 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Seca4g04398 439 Gene3D - 297 419 - -
Seca4g04398 439 PANTHER AAA DOMAIN-CONTAINING 16 437 - -
Seca4g04398 439 Pfam Vps4 C terminal oligomerisation domain 372 436 IPR015415 -
Seca4g04398 439 SMART smart 2 79 IPR007330 -
Seca4g04398 439 MobiDBLite consensus disorder prediction 91 108 - -
Seca4g04398 439 CDD RecA-like_VPS4 123 293 - -
Seca4g04398 439 FunFam vacuolar protein sorting-associated protein 4A 297 419 - -
Seca4g04398 439 Gene3D - 6 75 - -
Seca4g04398 439 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Seca4g04398 439 MobiDBLite consensus disorder prediction 73 108 - -
Seca4g04398 439 Gene3D - 124 427 IPR027417 -
Seca4g04398 439 FunFam Vacuolar protein sorting-associated protein 4 124 304 - -
Seca4g04398 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 435 IPR027417 -
Seca4g04398 439 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Seca4g04398 439 CDD MIT_VPS4 4 77 IPR045253 -
Seca4g04398 439 SMART AAA_5 161 297 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04398 Seca-Chr4 80783314 80789757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04398 160 360 Calmodulin-binding Proteins AT3G56690 35.468 4.14e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04398 K12196 - gmx:100788150 827.394