Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04397 ATGCAGCATCATATAGTTTACATGGGAGATCACTCACACCCCAATTCAGAATCCGTAATCAGAGCAAACCATGAGATGTTAGCTTCAGTTACTGGAAGTCTCAGTGAAGCAAAGGAAGCAGCCCTCCACCATTACAGTAAAAGCTTTCGAGGCTTCTCGGCCATGATTACGCCAGAGCAAGCTAATAAACTTGCAGAATATAACTCAGTCGTGTCTGTTTTTGAGAGCAAAATGAATAAGCTCCACACAACACATTCTTGGGATTTTCTTGGATTAGACTCAGCCTACAAGAGCAACAGTGTTGCTCTGGACTCTGCATCCAATGTCATTGTTGGTGTCATTGACTCTGGGGTGTGGCCCGAATCAGAAAGCTTCACAGATTATGGATTAGGTCCTGTGCCCAAGAAATTCAAAGGAGAGTGTGTTACTGGTGACAATTTTACACTAGCCAACTGCAACAAGAAAATTATTGGTGCCCGGTTCTATTTAAAAGGGTTTGAAGCAGAAACTGGTCCTCTAGAAGACGTTGTTAACAAAATTTTCTTCAGGTCAGCTCGAGATAGTGATGGACATGGAACACACACTGCTTCCACTATAGCAGGATCCATTGTTGCTAATGCCAGCTTATTTGGTATGGCCAAAGGAACTGCTAGAGGTGGTGCCCCAAGTGCCAGACTTGCCATCTACAAAGCCTGTTGGTTTGGGTTTTGCAGTGATGCTGATGTTCTTTCTGCAATGGATGATGCCATTCATGATGGGGTTGACATACTATCTCTTTCCCTTGGCCCTGAACCTCCTCAGCCAATTTACTTTGAGAATGCAATCAGTGTAGGAGCATTCCATGCATTCCAAAAGGGAATTCTTGTTTCTGCTTCAGCTGGAAACTCAGTTTTTCCACGTACTGCATGCAATGTTGCTCCTTGGATCCTCACTGTTGCTGCTAGCACAGTAGACAGGGAATTCAGATCAAACATCTACCTTGGTAATTCAAAAGTTCTAAAGGGTTTGTCTTTGAATCCAATAAAAATGGAACGTCCATATGGTCTGATATATGGAAGTAGCGCTGCAGCCGCTGGAGTTTCAGCAACAAATGCAAGCTTCTGCAAGAACAATACACTAGATCCTACCTTAATCAAGGGTAAAATCGTGATCTGCACAATTGAAACATTCACTGATGACAGACGAGAGAAAGCCATAGTAATAAAGAAAGGTGGGGGTGTTGGAATGATACTTATTGATCATAATGCAAGAGATGTTGGTTTTCAGTTTGTCATTCCAAGCACTCTCATTGGTCAGGATGCTGTAGAAGAGCTTCAAGCATATATTAAGACAGAAAAGAATCCCATTGCTATAATCTATCCAACAGTAACTGTTGTTGGTACCAAACCTGCACCAGAAGCAGCAGCTTTCTCTTCCATGGGGCCAAATATAATAACACCAGATATTATTAAGCCTGACATCACAGGACCTGGAGTGAATATTTTGGCAGCATGGTCTCCAGCGGCAACTGAAGCCACAGTTGAACAACGATCTGTCAATTATAACATCATTTCAGGAACATCAATGTCTTGTCCACACATATCTGCAGTTGCAGCAATTATAAAATCTCAACACCCCTCTTGGAGTCCTGCAGCCATAATGTCTGCAATAATGACAACAGCAACTGTTATGGATAACACACACCACCTCATAGGAAGAGATCCAAATGGAACTCAAACCACACCTTTTGACTACGGATCTGGACATGTTAACCCAGTTGCATCACTCAATCCAGGATTAGTATATGATTTTAATTCCCAAGATGTTGTCAATTTTCTCTGCAGCAATGGGGCAAGCCCAGCACAACTTAAAAACCTCACAGGGGAACTTACTCAGTGTCAGAAAGCTCCTACAGCTTCCTACAACTTCAATTATCCCTCAATTGGTGTGTCCAACATGAATGGAAGTTTATCTGTTTATCGCACAGTTACATACTATGGTCAGGAACCAACAGTATATTATGCAAGTGTTGAAAATCCATCTGGTGTGAAAGTTACAGTTACACCAGCAGGACTGAAGTTTTGGAAAGCAGGGGAGAAGATAACTTTCAGGATTGATTTCACCCCTTTCAAGAAAAGTAATGGAAACTTTGTGTTTGGTGCCTTGACATGGAGTAATGGTAAACAAAGGGTTAGGAGTCCTATTGGTCTTAACGTACTATCTACTTAG 2208 0.4207 MQHHIVYMGDHSHPNSESVIRANHEMLASVTGSLSEAKEAALHHYSKSFRGFSAMITPEQANKLAEYNSVVSVFESKMNKLHTTHSWDFLGLDSAYKSNSVALDSASNVIVGVIDSGVWPESESFTDYGLGPVPKKFKGECVTGDNFTLANCNKKIIGARFYLKGFEAETGPLEDVVNKIFFRSARDSDGHGTHTASTIAGSIVANASLFGMAKGTARGGAPSARLAIYKACWFGFCSDADVLSAMDDAIHDGVDILSLSLGPEPPQPIYFENAISVGAFHAFQKGILVSASAGNSVFPRTACNVAPWILTVAASTVDREFRSNIYLGNSKVLKGLSLNPIKMERPYGLIYGSSAAAAGVSATNASFCKNNTLDPTLIKGKIVICTIETFTDDRREKAIVIKKGGGVGMILIDHNARDVGFQFVIPSTLIGQDAVEELQAYIKTEKNPIAIIYPTVTVVGTKPAPEAAAFSSMGPNIITPDIIKPDITGPGVNILAAWSPAATEATVEQRSVNYNIISGTSMSCPHISAVAAIIKSQHPSWSPAAIMSAIMTTATVMDNTHHLIGRDPNGTQTTPFDYGSGHVNPVASLNPGLVYDFNSQDVVNFLCSNGASPAQLKNLTGELTQCQKAPTASYNFNYPSIGVSNMNGSLSVYRTVTYYGQEPTVYYASVENPSGVKVTVTPAGLKFWKAGEKITFRIDFTPFKKSNGNFVFGALTWSNGKQRVRSPIGLNVLST. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04397 735 Pfam Peptidase inhibitor I9 4 81 IPR010259 -
Seca4g04397 735 ProSitePatterns Serine proteases, subtilase family, serine active site. 519 529 IPR023828 -
Seca4g04397 735 FunFam Subtilisin-like protease SBT1.5 108 342 - -
Seca4g04397 735 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 82 IPR037045 -
Seca4g04397 735 CDD PA_subtilisin_like 324 452 - -
Seca4g04397 735 PRINTS Subtilisin serine protease family (S8) signature 106 125 IPR015500 -
Seca4g04397 735 PRINTS Subtilisin serine protease family (S8) signature 187 200 IPR015500 -
Seca4g04397 735 PRINTS Subtilisin serine protease family (S8) signature 518 534 IPR015500 -
Seca4g04397 735 Gene3D Peptidase S8/S53 domain 108 601 IPR036852 GO:0004252|GO:0006508
Seca4g04397 735 Pfam PA domain 364 438 IPR003137 -
Seca4g04397 735 Gene3D - 606 732 - -
Seca4g04397 735 CDD Peptidases_S8_3 80 555 IPR034197 -
Seca4g04397 735 Pfam Subtilase family 107 563 IPR000209 GO:0006508|GO:0008236
Seca4g04397 735 Pfam Fibronectin type-III domain 635 728 IPR041469 -
Seca4g04397 735 SUPERFAMILY Subtilisin-like 81 593 IPR036852 GO:0004252|GO:0006508
Seca4g04397 735 ProSiteProfiles Serine proteases, subtilase domain profile. 86 589 - -
Seca4g04397 735 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 5 728 IPR045051 -
Seca4g04397 735 Gene3D - 318 459 - -
Seca4g04397 735 FunFam subtilisin-like protease SBT1.5 318 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04397 Seca-Chr4 80776989 80782646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04397 4 728 Subtilisin-like Serine Gene Family AT2G04160 44.430 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04397 - - gmx:100792672 1276.92