Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04385 GCTGAACTTTTCGACAAGTTTCTGCATGGCTCAACCTTAAAGGAATGCTATTCTTCCGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATTTTGTTGAAGATACTGATGGTCATGACCAGATGCACCTTTTTATTCCTTATTCAACTCTTTCTGTCATACAGAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAACAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATTTTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCTGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTATAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGAAAATTAGTTGATGCCTTTAATTCAATGAACAAGAATAAAAAGCATAATGATTCTAATGGTGTCTGCCTTGTGATGGATGATGAAACTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAATTCTACATGCGGACCTAGACCAATTATACGGCAGTATGAAGCTAATAATGAACGGAATTTAATGGAGCCCAACGGTCAAGAAGATTTGGAGCAACGACATAATGATCGTGGCAGCATGGATCAGCAACTTTCACCATTGCAACAAAATGAAATATCATGTGAAAACGTTGACAGGACTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAGTTATGCTGGAAAGGAAAAAGAAGCGAAGATTGGAGAAATCTGACCATTTAAATGGCATTCTGGAACCACTGAATGGTAAGATTAAACAGGGCAGGGGTAATGTCAGTTCATACATGATAAGCCCTGAAGACTATCTAACTCAGTACCACTGGCAGATAATACAGCTAGTTCACAGTTCACAGACTAGCCAAATTTTTGCTTGGGTTATTGTTGCTGGGTTTATGTGTATGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCTAAATCACCAATTACTGAAGAGTCACCAATTACTGAAGAATTTTGGGTTAAACGTGTCAACAAGACTCTTCCTCATGGAAGACCTAGTTATAACCTGTATGAGGTGACACCTAAAGTTCAAAATATTGAAGCAGACAAAAAACTTGCAGATCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAACACTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAAAAAACGTAGTCTACAAAAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTACCTCGAACAATCAATATCCTTCTTTTACTTGTACCATAGCATCTCTGAGGGGCGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAAATTTTCTTGAAAGACAATTTCATGCCGCTTGCCAAGCTTTGTCTATTGAGCCACCTCCAAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTGATGCAAAGTGCAATTAATTATCACAGGTTTTTTTTCTTTTTTCCTTTTACATCCTTTGGACTGAATTATTATGCTCTCTCTGATAATGATAGAGATAGGAGTGAACATCGTAAGCCCATGGTTGCTGTCATTGAATGTCCAAATGTTCAACTAGTAAAATTGGGCATTCCAGCTCTAGATAATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGGTACCACTAGGAAACTTAGAACCTGACTGGCTTATATTTACAGCAGATACCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTTCTTTGGATATCTGATGATGGGCTTCCAGACTTGGGTGGCATTAATGGTGAAGAGAACTGTTTTGTCGACGAGGTCCACCAACCTGTTCTCACGTATCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCTCTACTAAAATGCAACCAAGTTAACGAAATGGAAGGAGGTGCCTTGTTAGGATTAGATCATGAATTTGATTCTGAAGCATTTTTTGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGTGCACTCCCCTTTCGAGTCCTAAAACAGTTGATCCAGCGGTGCCTTGCTGATGCAGTTACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTATATAGATGGCTTTGCAGCCCACAATCAAAACTTCATGATCCAGCTCTTCACCAACTACTTCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTTCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATTGACACAGGGAAATATGATCTGTCTGCAGCCAAAGCTTACTGTGATAGTTTGTTCAAAACTATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTATTCATGGACCAGTATAACTATGGTGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAATCTCAAGTTGACATCATATCAAGCTGGAATATTTCTGAGTACTTACCAAAAAAAATCCAAGACCATTTTGTTTTCATCGTATCTCAATTCATGTATATTCCTTGGAATTATACACAAAAACAAGCAGCAATCAGGGCTTCGTTGCTGAATGGTGACTCTTGCACTCCATCAATTAATATTGGAGCTGTAGAGGCTTTTGAATCAGAAATAACAGAATTTATTAAAGGGCAGATTAGCTCTTACTTTACAGAGAAACTGCTAGGAGTTGTTCGTGACATTGTTCTTCATATGAAGGAGATGATCAGATCAGAAAAAGACCAGAGTATATCATCCGGCCCTCCTCAACTCATGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAATTTATCAAGCATGTCATGAGAAAGAATTTGTTAAAATATGTTCGGGTGAGGGAGTTTGCTCCAGAAGCAGAGTTTCGTGATCCTTGTCATTCCTTCATCTTATCCAATGTCATCTGCAGAGACTTGGACTTGTGTCGAGACTCGGCTTTATTGACTGAGGAGTGGCGTTGTGCCGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCCCTTCTTCAGATTGTACGACAAAGGGAGCGGCTATACCACCTGCAAGATCTGGTGTGTCTCAGGTGCCACCAGGTGAAAGCTGCACATTTAGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGACGTAAGTGAATTCCGCACAAACATGCAGATATTCTTAAACATAGCTTCTCGGCAGAAATTCCAACTTCTTCAAGAATGTACCTCCTGGATTTTAGAACTTAGATTAGATAGTTAA 3750 0.4027 AELFDKFLHGSTLKECYSSVASVANRWLDLLDFVEDTDGHDQMHLFIPYSTLSVIQNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKEDKFRQRKLVDAFNSMNKNKKHNDSNGVCLVMDDETVNDLEDFGNKGRNSTCGPRPIIRQYEANNERNLMEPNGQEDLEQRHNDRGSMDQQLSPLQQNEISCENVDRTVDYQGWLQIKKRKWKVMLERKKKRRLEKSDHLNGILEPLNGKIKQGRGNVSSYMISPEDYLTQYHWQIIQLVHSSQTSQIFAWVIVAGFMCMIPVSVPRVFYLNSKSPITEESPITEEFWVKRVNKTLPHGRPSYNLYEVTPKVQNIEADKKLADLLADPDVEGIYETKVPLEFNTIVQLGCVCKVDKTAKKRSLQKPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPNFLERQFHAACQALSIEPPPRNGINFKVDYVAHVKDAETVMQSAINYHRFFFFFPFTSFGLNYYALSDNDRDRSEHRKPMVAVIECPNVQLVKLGIPALDNFPCLSIPSNARDSQYQVPLGNLEPDWLIFTADTFFSRALHDNQQVLWISDDGLPDLGGINGEENCFVDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFFVNGQNGFDESTSCALPFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSAAKAYCDSLFKTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNISEYLPKKIQDHFVFIVSQFMYIPWNYTQKQAAIRASLLNGDSCTPSINIGAVEAFESEITEFIKGQISSYFTEKLLGVVRDIVLHMKEMIRSEKDQSISSGPPQLMGDLHRGDAALEFIKHVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCHQVKAAHLAEQCACAGSFRCKEDVSEFRTNMQIFLNIASRQKFQLLQECTSWILELRLDS. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04385 1249 Pfam Domain of unknown function (DUF1744) 694 954 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Seca4g04385 1249 SUPERFAMILY DNA/RNA polymerases 2 214 IPR043502 -
Seca4g04385 1249 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 52 695 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Seca4g04385 1249 SMART DUF1744_2 580 954 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04385 Seca-Chr4 80178935 80192392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04385 1 1243 Core DNA Replication Machinery Family AT2G27120 52.304 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04385 K02324 - gmx:100778115 1909.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04385 4 80178935 80192392 Seca4g04385 4 80178935 80192392 ECH