LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g04384	ATGAGCGGCGACGGCCGGAGACGGGACTGGATAGACTCCAGGATATCCAAGAAGCAGAAGCTGATCCTCAACGCCGAGGAAGAGCTCGAGGCAAAGTTAGGGTTCAATCTTTTCTCAGAGGGCAATAAAAGACTTGGATGGTTGCTCACTTTTTCACCCTCATCTTTTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTTGATCTTTACTTTGTTACACAGGATGGGTCTACATTCAAGTCAAAATACAGATTTCACCCTTATTTTTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGACGACGCTATGAAAGTCAGATTGCCAATATTGAAATTATAGAGAAGGAAGACCTGGATCTTAAAAATCATCTGTCTGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGAAACAATTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCACAAGCCTATGAGGCCATATTAACCGGAAGAAGCAGAGAACAAAAACCTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCCATTGACAATGATATACGGAGTGGCCAGTGGTATGACGTTGGAGTGTCCAATAACGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACTAAACTTCCCTTAAAATTTCCTGATGCCGAGTATGATTTGATTATGATGATTTCATACATGGTCGATGGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGAGGACATAGAGGATTTAGAATACACTCCAAAACCAGAGTTTGAAGGGTATTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACATATAATGGTGATTTCTTTGATTGGCCATTCATGGAACGAAGGGCAGCCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTTCAATGCGACACGAATCAAGGGGAGTGTCGTGCTAAATTTGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCGCAGGGGAGCCAAGGCCTGAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCATTGGAAGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACATATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAGCATCAATCTGATCCAGAGAAGTTTTACAACAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTGGAATGCCTAGAAAGTGGTGTTTTTAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATGAGCAATTGATCAGCAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCACCAATTATGATGAAGTAAAGAATGCTATCACGGAAAAGCTTGTAAAATTACGAGATGCACCGATTCGTGATGAATGCCCCCTCATTTATCATCTGGATGTTGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCACCATCAATTGTTACGGATGAGATTTGCACTGCATGTGACTTTAACCGTCCTGGAAAGACTTGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATTTAAAGAAGCAGATTGAGTCAGAGCTTGTTGATGGTGCTAATGAGAGGTCATCAAAATCTTTTCTTGACCTACCCAAGTCAGAGCAACAATCAAGACTGAGAGAGCGTTTAAAGAAATATTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATTTGCATGCGTGAAAATCCATTTTATGTGGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAGGGCCTTAATAAGGTTTGGAAGGGAAAACTAGCAGAGGCCAAGGCCAGTGGAAATTCTATAAAGATCCAGGAAGCACAAGATATGGTAGTGCTTTATGATTCATTGCAACTCGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGCGTAGTCACATATACTGGTGCAAAAATTATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGGAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCGCAGATCCAATTAAGAAAACTTATACAATTCATAGTGAATGCTCTATTGAGTTTGAGGTGGATGGACCATACAAGGCAATGATCATTCCTGCTTCCAAGGAGGAAGGGATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGGGGTGAACTGAAGCTAATAAAAGTTTTCCAGGTATATTGA	2883	0.4072	MSGDGRRRDWIDSRISKKQKLILNAEEELEAKLGFNLFSEGNKRLGWLLTFSPSSFEDEETHKVYSCVDLYFVTQDGSTFKSKYRFHPYFYAATKDKMEMDVEAYLRRRYESQIANIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVKQLMNVKSDLMHVVERNKAKSDAAQAYEAILTGRSREQKPQDFLDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVGVSNNGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFMERRAAHHGFKMSDELGFQCDTNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYEQLISNLDRDLQYAIRVEGKMDLESVTNYDEVKNAITEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHLKKQIESELVDGANERSSKSFLDLPKSEQQSRLRERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLAEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLADPIKKTYTIHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQVY.	961

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g04384	960	Gene3D	DNA Polymerase, chain B, domain 1	56	229	-	-
	Seca4g04384	960	SMART	polmehr3	240	843	IPR006172	GO:0000166\|GO:0003676\|GO:0003887
	Seca4g04384	960	Pfam	DNA polymerase family B, exonuclease domain	74	401	IPR006133	-
	Seca4g04384	960	FunFam	DNA polymerase epsilon catalytic subunit	56	228	-	-
	Seca4g04384	960	FunFam	DNA polymerase epsilon catalytic subunit	241	469	-	-
	Seca4g04384	960	SUPERFAMILY	Ribonuclease H-like	60	468	IPR012337	-
	Seca4g04384	960	SUPERFAMILY	DNA/RNA polymerases	487	958	IPR043502	-
	Seca4g04384	960	CDD	DNA_polB_epsilon_exo	241	444	-	-
	Seca4g04384	960	FunFam	DNA polymerase epsilon catalytic subunit	756	938	-	-
	Seca4g04384	960	Gene3D	-	239	469	IPR036397	GO:0003676
	Seca4g04384	960	PANTHER	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	16	958	IPR029703	GO:0003677\|GO:0003887\|GO:0006260\|GO:0006281\|GO:0008622
	Seca4g04384	960	Pfam	DNA polymerase family B	752	955	IPR006134	GO:0000166\|GO:0003677
	Seca4g04384	960	Gene3D	Palm domain of DNA polymerase	754	938	IPR023211	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g04384	Seca-Chr4	80154698	80167206	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g04384	1	959	Core DNA Replication Machinery Family	AT1G08260	85.521	0.0	1729

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g04384	K02324		-	gmx:100812003	1773.06