Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04383 ATGAACACTATTAATTTACAATTTTGCCACTGTTCCCAACTCCTCTCTTCAACCCCAAAGGTCCCCTCCCTCGTTCCTTTCTCGCAGGTTGGAAAATTAACTCTGAGAAACCCAACTCCTTCTACCATTTTCTGCAAAAATCGTCTCTTTTCTCCAATTCGAGCGTCTATGGCCTCATCCACTGTCGCAGACACAGAGATGAAGCCATTCTCCGTGCTCTTCGTGTGCCTTGGCAACATCTGCAGGAGCCCAGCTGCTGAAGGAGTCTTCACAGACTTGGTCAAGAAAAAGGGTTTTGATTCCAAGTTCAAAATCGATTCTGCTGGAACAATCAATTACCACGAGGGCAATGAAGCTGACCCGAGAATGAGGGCAGCCTCCAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGATCTCATTCTTGCTATGGACAAGCAAAATAGAGAGGACATTTTGGAGGCCTTCAATAGATGGAAATTTAGACATACTATACCTGATGATGCACATAAAAAGGTGACTACAGAAGTTTACTCTTTTTGGGCTTTTGTTTTGTGTATATTTTTCTAG 603 0.4328 MNTINLQFCHCSQLLSSTPKVPSLVPFSQVGKLTLRNPTPSTIFCKNRLFSPIRASMASSTVADTEMKPFSVLFVCLGNICRSPAAEGVFTDLVKKKGFDSKFKIDSAGTINYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDKQNREDILEAFNRWKFRHTIPDDAHKKVTTEVYSFWAFVLCIFF. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04383 200 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 42 185 - -
Seca4g04383 200 SMART LMWPc_2 70 194 IPR023485 -
Seca4g04383 200 Pfam Low molecular weight phosphotyrosine protein phosphatase 72 169 IPR023485 -
Seca4g04383 200 Gene3D - 54 195 - -
Seca4g04383 200 PRINTS LMW phosphotyrosine protein phosphatase signature 72 89 IPR017867 GO:0004725|GO:0006470
Seca4g04383 200 PRINTS LMW phosphotyrosine protein phosphatase signature 115 131 IPR017867 GO:0004725|GO:0006470
Seca4g04383 200 PRINTS LMW phosphotyrosine protein phosphatase signature 148 163 IPR017867 GO:0004725|GO:0006470
Seca4g04383 200 SUPERFAMILY Phosphotyrosine protein phosphatases I 67 179 IPR036196 -
Seca4g04383 200 CDD LMWPTP 71 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04383 Seca-Chr4 80143775 80146305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04383 10 184 Protein tyrosine phosphatase (PTP) family AT3G44620 57.143 2.42e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04383 K25307 - gmx:100797254 280.796