Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04379 ATGACCGAAAGAAAGAAAGAAAGAATAGCGATGGCGCCAGAGGACACTGTAACTTCAAACCCTAGCCATGGAGAACGACCAAAGGTGGTGGTTATAACGGGCCCCACCGGTTCTGGTAAGTCGAAGCTCGCCGTTGATTTGGCCTCTCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAAGTCTACCGTGGCCTCGATGTTCTCACCAACAAACACCCCCTCTCTGATCAAAACGGAGTGCCGCACCATCTCTTAGGTACCGTGAATCCAGATGTGGAATTCACAGCCAAAGCTTTTCGGGATTCTGCTATTCCCATCATCGATGCCATATTGGCTCGCAACCACTTGCCCGTTATAGTTGGGGGCACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGATTCGGCAGATGACATGAAAGAAAGCTGTTTGGGCGACCCACCTGGTACCACTTGGTCTGATAATGGTTTCGTTGCTGAAAATGACAGTTCAAATGATAGTTATAAACTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCTAATAACCATAGGAAGATAAATCAATATATTAGTTTGTATGCTCGCACTGGTGTTCTTCCTAGCAAAGTTTTTCAAGGAAAGGCAGCAGAGAAGTGGGGTCAAGTTGATAGCTTAAGATATGATTGCTGTTTTATATGTGTGGACGCATCTCTCCCTGTACTGGACAGATATGTCGATCATAGAGTGGATTGCATGATTGATGCTGGACTACTCAATGAAGTCTATAACATTTATAATCTTCATGCAGATTATTCTAGAGGTTTACGGCAGGCCATTGGTGTCCGTGAATTTGAGCTTCTTCTTAGAACTTTTGTTGTTGAAAACATCTCTAAAAGAGAGAAGGAATTAACAGAGAGATCCAGCATAGAGAAGCATGAGACATTGTTCAATGGTAATGTGATGGAGTGGTTGAGGTCTTCCTCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATAGAAAAAGTAAAACTTAATACCCGAAGACTTGTTCGCCGTCAGAAAAGAATGCTCAGTCGACTGCAAACACTGTTTGGTTGGAACATACACTATGTTGATTCCACGGAATCAATATCAAGCAAATCAGATGATGTATGGAGAGGCCAAGTGGTTGAATCTGCCAAGAAGATAATTAAAACTTTCCTCAGTGAGGATGGAAGCTTGTCATCCACCTTTGGCATGTCAAATGACACCGGGATGAAATTAAACCAAAGGGATCTCTGGACTCAATACATATGCAAGGCCTGCGGTGATCGGGTGCTTCGAGGATTACATGAATGGGAACAACATAGACGAGGTCGTGGGCACCGAAAACGTATTTCTCGTATCAAGAGCAAGGAACAAGGTCATGGTTTCGTGGAACAAAAGCTGGAGTATTCTGAGTGTAAAACTGCGAATAGTTAG 1473 0.4311 MTERKKERIAMAPEDTVTSNPSHGERPKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKHPLSDQNGVPHHLLGTVNPDVEFTAKAFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSPFLLDDSADDMKESCLGDPPGTTWSDNGFVAENDSSNDSYKLLKDIDPVAANRIHPNNHRKINQYISLYARTGVLPSKVFQGKAAEKWGQVDSLRYDCCFICVDASLPVLDRYVDHRVDCMIDAGLLNEVYNIYNLHADYSRGLRQAIGVREFELLLRTFVVENISKREKELTERSSIEKHETLFNGNVMEWLRSSSDTKSIILLEEAIEKVKLNTRRLVRRQKRMLSRLQTLFGWNIHYVDSTESISSKSDDVWRGQVVESAKKIIKTFLSEDGSLSSTFGMSNDTGMKLNQRDLWTQYICKACGDRVLRGLHEWEQHRRGRGHRKRISRIKSKEQGHGFVEQKLEYSECKTANS. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04379 490 Pfam IPP transferase 62 359 - -
Seca4g04379 490 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 29 298 IPR018022 GO:0008033
Seca4g04379 490 FunFam tRNA dimethylallyltransferase 429 472 - -
Seca4g04379 490 Gene3D - 27 429 IPR027417 -
Seca4g04379 490 Hamap tRNA dimethylallyltransferase [miaA]. 29 402 IPR018022 GO:0008033
Seca4g04379 490 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 405 IPR039657 -
Seca4g04379 490 FunFam LD10347p 163 218 - -
Seca4g04379 490 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g04379 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 271 IPR027417 -
Seca4g04379 490 Gene3D Classic Zinc Finger 430 475 - -
Seca4g04379 490 Gene3D - 163 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04379 Seca-Chr4 80065631 80069854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04379 32 470 C2H2 Transcription Factor Family AT2G27760 57.336 4.08e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04379 K00791 - gmx:100792690 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04379 4 80065631 80069854 Seca4g04379 4 80065631 80069854 ECH