Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04378 ATGGACTTTATTGGGATTAATAAATCAGCTCCTTCTTCCACTAGTTCATCATCTCACAAGAGAAAAGCAGGGAGAAAAAAGTTCAGGGAAACTAGGCACCCGGTGTATAGAGGTGTACGGCAGAGAAACGGCAACAAATGGGTGTGTGAAATCAGGGAACCAAACAAGAAATCAAGGATTTGGGTTGGGACTTACACCACACCTGAAATGGCTGCTAGGGCACATGATGTGGCTGTTTTAGCACTTAGAGGCACATCAGCAGAGTTCAATTTCCCTGATTCAGCTATGCTCCTTCCAGTTGCAAAGTCATGTTCAGCCACAGATATAAGAGAAGCAGCAGCAAAAGCCACTCATGATCATGAGGGTTTCAAACCAAGCAGCAGCCCTAATGATGATGAGTCCAAAACAAGAATATTCTTGGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTAGATAGTATGGCTGAGGGTTTGCTTATTACCCCGCCATCTATGAAGACAGCATTGGATTGGGACAACATTGAATGTGAAATAGACCTCACTCTATGGACAGACTAG 561 0.4385 MDFIGINKSAPSSTSSSSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPNKKSRIWVGTYTTPEMAARAHDVAVLALRGTSAEFNFPDSAMLLPVAKSCSATDIREAAAKATHDHEGFKPSSSPNDDESKTRIFLDEEALYNMPGLLDSMAEGLLITPPSMKTALDWDNIECEIDLTLWTD. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04378 186 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 MobiDBLite consensus disorder prediction 19 33 - -
Seca4g04378 186 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Seca4g04378 186 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 MobiDBLite consensus disorder prediction 115 134 - -
Seca4g04378 186 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g04378 186 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Seca4g04378 186 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Seca4g04378 186 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Seca4g04378 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 185 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04378 Seca-Chr4 80042378 80042938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04378 15 185 AP2-EREBP Transcription Factor Family AT4G25470 49.198 1.25e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g04378 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04378 - - gmx:100793751 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04378 4 80042378 80042938 Seca4g04378 4 80042378 80042938 ECH
Seca4g04378 4 80042378 80042938 Seca4g04378 4 80042378 80042938 PCT