Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04373 ATGAGATTGGAGAAGTGCTGGTTCTGTTCTTCTACTATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAGAACTTCAAAATGAAGAGGAATCCTCGGAAGGTGAAATGGACCAAGGCATACAGGCGGGTGCATGGAAAGGATATGACACAGGATTCAACCTTCGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAGATCAGAGTGAGCAGGGAGGAGAAACACCACAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAGATGGAGGCAGTTAAAGAGTTGGAGCAGGGCATCAGTCTGGTCAAAGCTCCTTCTGTCCTTCAAAAGCCCACAGCCACAAAGCCTAACCCTACTCGATACGTCGCCGTTCGATGCTCTCGGAGCAGCGTGCAGGAGATACAAGAACTGGGTTCGGAGCTCCGCACTTCGCTCCCGTTCGGTCCATTAAAGGCGGCGAAGAGGGTGGTGCTGGTGAGGCACGGGCAGAGCACGTGGAATGCCGAGGGAAGGATCCAAGGCAGTTCCGATTTCTCCGTTCTCACGAAGAAAGGGGAGTCTCAGGCCGAGACTTCCCGCCAAATGCTCATCGATGACCACTTCGATGCCTGCTTTGCAAGGTTTCTTTCTTCCTCCATTGTTGCTTATTACGGCTTTCCTTTGGCACGATCCAAGAGAACCGCTGAAATCATATGGGGACCTCGCCAAGAACCCATCATTCCTGAGTTTGAGTTGCGGGAAATCGATTTGTATTCCTTTCAGGGTTTGTTGAAGCAAGAGGGAAAAGCGAGATTTGGTTCTGCTTATCGTGAATGGCAGGTTGATGCCGCGAATTTCATCATTGATGGTCATTATCCGGTGAGAGAGCTGTGGGAACGTGCTAGAAACTGCTGGACTAAAATTTTGGCTCACGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTCTTGGGGCTGAGTATTTCAGAACTTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTGGATTTCACCCCCAGACCCGATGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCGCCTATTGCGGGTGGAAAATCTGGAGGTAGAGAGACAAGTAAGCGGATCATACTTGTTTGTAATGGAACTACACAAGGAAATACAGAGGATGGTTTTCCTTTTGCTGGTGATCAACCGATGAACATGCTTGGTGTTATACAGTCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAATGTGAATTCCATAATTAGCAGTCCTAACAAAGCCTGTGTTGAGACAGCCATGGCCATCTCCAAGGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCACGCTATGTTGAGATGAAGCAGATGGGGAACCTTAATATTGAAACCATCTTTAGACAATCCAAAATGGCAAGTAACTTACTGTCATATCAGGATATATCCAATCTTGTACCATTTCAGCCTGGGTGGTTAAATAGAGTTGAGGATGGATTGAGAACAACATTATGGGATCAATCTGGAAAAGCCTGGCAATCCCTGTTGGATGAAATATCTGATGATTCTAGAACAGGAGAAGTTGTAGTTGCAGTTGCTCATCCTGCGATCCACATAGCACTAATGGCACACTGCCTTAATTTGACAAAAGAATGGTTGGGATCGTTTCATCTTGATGCAGGGAGCATTAGTGTCCTTGACTTCCCGGATGGAACTAAGGGAAGAGGCGTCATCAGGTGCATAAATTATACTGCACACTTGGGGAGATGGTCCATCCCCATCACAAGATCAACGGAGGATGGTGAAGAGTTTTAA 1953 0.4654 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREEKHHKNRMKGKKQKLQMEAVKELEQGISLVKAPSVLQKPTATKPNPTRYVAVRCSRSSVQEIQELGSELRTSLPFGPLKAAKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGESQAETSRQMLIDDHFDACFARFLSSSIVAYYGFPLARSKRTAEIIWGPRQEPIIPEFELREIDLYSFQGLLKQEGKARFGSAYREWQVDAANFIIDGHYPVRELWERARNCWTKILAHDSRSVLVVAHNAVNQALVATAIGLGAEYFRTLLQSNCGVSVLDFTPRPDGGSPHICLNRLNQTPGSPIAGGKSGGRETSKRIILVCNGTTQGNTEDGFPFAGDQPMNMLGVIQSQKSAELLLDLNVNSIISSPNKACVETAMAISKVQEAADCLGADCVPRYVEMKQMGNLNIETIFRQSKMASNLLSYQDISNLVPFQPGWLNRVEDGLRTTLWDQSGKAWQSLLDEISDDSRTGEVVVAVAHPAIHIALMAHCLNLTKEWLGSFHLDAGSISVLDFPDGTKGRGVIRCINYTAHLGRWSIPITRSTEDGEEF. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04373 650 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Seca4g04373 650 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 190 199 IPR001345 GO:0003824
Seca4g04373 650 SMART 4TRASH 6 44 IPR011017 -
Seca4g04373 650 CDD HP_PGM_like 417 625 IPR013078 -
Seca4g04373 650 SUPERFAMILY Phosphoglycerate mutase-like 186 393 IPR029033 -
Seca4g04373 650 FunFam Putative 2-carboxy-D-arabinitol-1-phosphatase 409 637 - -
Seca4g04373 650 Pfam Histidine phosphatase superfamily (branch 1) 188 382 IPR013078 -
Seca4g04373 650 Pfam Histidine phosphatase superfamily (branch 1) 418 483 IPR013078 -
Seca4g04373 650 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Seca4g04373 650 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Seca4g04373 650 SMART PGAM_5 187 353 IPR013078 -
Seca4g04373 650 SMART PGAM_5 417 587 IPR013078 -
Seca4g04373 650 FunFam Phosphoglycerate mutase 186 402 - -
Seca4g04373 650 PIRSF 6PFK_fruc_bisph_Ptase 570 612 - -
Seca4g04373 650 PIRSF 6PFK_fruc_bisph_Ptase 23 172 - -
Seca4g04373 650 PIRSF 6PFK_fruc_bisph_Ptase 182 368 - -
Seca4g04373 650 Gene3D - 186 385 IPR029033 -
Seca4g04373 650 CDD HP_PGM_like 187 386 IPR013078 -
Seca4g04373 650 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Seca4g04373 650 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Seca4g04373 650 SUPERFAMILY Phosphoglycerate mutase-like 415 638 IPR029033 -
Seca4g04373 650 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 413 618 - -
Seca4g04373 650 Gene3D - 410 637 IPR029033 -
Seca4g04373 650 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04373 Seca-Chr4 79969550 79977645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04373 1 137 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 77.372 1.84e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04373 K22200 - gmx:100794084 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04373 4 79969550 79977645 Seca4g04373 4 79969550 79977645 ECH