Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04366 ATGGAATCTCCAATGGAATTTTGGGGTGTTGAGGTTAAGGTTGGGCAATCTGTTAAAGTAGACCCAGCGGATGACTTGAATGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGACAAAACAAATGAACCTGTTGTTTTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTGACTAGGGATGATATCCCTCAGCTATCTATGGATTTAGTTCTGGACAAGGAGTCTGAGCTTTCCCACAATTCAAAAAATGCTAGTGTCTATTTTTGTGGATACAAAGTTATAACATTCTTGCTTAATCGTCATCCTAATATCCCTATATGCTATGTATCACTGTTTCAACTTTCATTTTTCCTTAACTTCCGCGTGTTCCCTGTGGCACCAGTGAGGATGCTGATATTTCTGACTTTTCTGATAACTAACGATTATCTTCTTTTAGGAAAACCTGAAACAAAAGCTGAACTTGCAAAGGTTGCTAAAGCTGGAAAACCTGTTGCCATGACTGGTGCATCAGCAAAACAAGTCAAGATTGTTGATCCAAAGAAAGATGAAGAGGATGAATCTGATGATGAATCCGATGATGACTCTGCTGATGAAGATGAATCCGATGATGATGAGATGAATGCTGATAGCGATAGTGATGGTGATGACGAGAATGAGAGTGATGAAGATGATGAAGAGACCCCTGTTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTCCTACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTATGAAGAAAGGTGGAAAAACTCCCAACAGTGCTGCAAAGAACCAGACTCCCAATTCTGGTTTATCTTGCAAAAGTTGTAACAAGTCTTTCAACAACGAAAGTGGTCTGCAACAACATAAAAAGGCCAAGCATGGTGGTCAGTGA 990 0.4061 MESPMEFWGVEVKVGQSVKVDPADDLNGYIHISQVALGEAKKDKTNEPVVLYLKVDDQKFVLGTLTRDDIPQLSMDLVLDKESELSHNSKNASVYFCGYKVITFLLNRHPNIPICYVSLFQLSFFLNFRVFPVAPVRMLIFLTFLITNDYLLLGKPETKAELAKVAKAGKPVAMTGASAKQVKIVDPKKDEEDESDDESDDDSADEDESDDDEMNADSDSDGDDENESDEDDEETPVKKVDQGKKRPNESASKTPVPTKKAKNATPEKTDGKKGGHTATPHPMKKGGKTPNSAAKNQTPNSGLSCKSCNKSFNNESGLQQHKKAKHGGQ. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04366 329 MobiDBLite consensus disorder prediction 176 329 - -
Seca4g04366 329 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Seca4g04366 329 SUPERFAMILY ARM repeat 182 234 IPR016024 -
Seca4g04366 329 ProSitePatterns Zinc finger C2H2 type domain signature. 305 326 IPR013087 -
Seca4g04366 329 MobiDBLite consensus disorder prediction 191 232 - -
Seca4g04366 329 MobiDBLite consensus disorder prediction 233 248 - -
Seca4g04366 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 329 IPR013087 -
Seca4g04366 329 MobiDBLite consensus disorder prediction 290 318 - -
Seca4g04366 329 Gene3D Nucleoplasmin core domain 2 103 - -
Seca4g04366 329 FunFam Histone deacetylase HDT1 5 104 - -
Seca4g04366 329 SMART c2h2final6 303 326 IPR013087 -
Seca4g04366 329 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04366 Seca-Chr4 79789392 79792712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04366 251 326 C2H2 Transcription Factor Family AT5G03740 49.412 3.66e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04366 NPL 1.5e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04366 - - gmx:100795506 320.472