Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04305 ATGGAGGACTTGAACCAAAACGTTGCTGTCACTGACTCTCCAAGCCTCACCCTGAACAAACCACAAACCAACAATGAGACACCCGTGCAAACCAACTATGGCGAAAACAACGCCGCACTGGAAGGTGTCGGAGTTGAGAATGTTGTCTCTGGCTCTGTCATCTCCGGAGCAAAGTCCGAGAATGGAGGTTCGGAACCAGTGGTGAAGAGGGGGAGGGGAAGACCTCGGAAGTACGATGTTAATGGGAAACTGCTGTCTTCTCCGGCAACACCACCGCCGCCGCCCGGATTTGACATTCAGCCTTATGTTGAAAGCGTTGTCAAGAGAGGCAGGGGACGCCCTCGTGGCACTGGAAAACTGCAGATTCTGGCTTCCATGGGTGGGTATGTTGCAGAAACAGCTGGGGGAAGCTTCATACCTCATGTGCTGACTGTGAACGCTGGGGAGGATGTGGTCAACAAGATAATATCATTTTTTCAGAAAGGCCCTCGCTCAGTTTGCATACTCTCTGCTAATGGTCCTGTATCAAGTGTCACCATTCGCCAACCTGGTCCTGCTGGTGGTTTTTTGAGATATGAGGGCATCTTCGAGATTTTATCTCTATCTGGCTCATGTACCTACACTGGTGCTGGTGGTGCACTTCGAAAAAGTGGCATGTTGAGTGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATAGCAGCTGGTCCTATTCAACTTGTGTTGGGCACTTTCAAGCAAAACATCACCAACAAAAACAAGAAAAGGCACTCATCTGCTGCCGCCGCCGCCGCCGCCAACATGGCTGGTAATCCAGATCACCTGAAGGTTCCTAAGTTGATGGAAGGAGAGCAGAGTTACCCTTCACCAATATCAGCAATTAGGCCAGCAGCAACAACAACTAATGGGGTTGCAGATAAGGCCATTCCTGCAACAACTGATGTAGTGGCAGATTATGTGAATCCTGATGATAACAATGTGCATTCTGATTCTGTTAGTGGTGTTGACTTGGAGTACCAGATCCTTCAGCCTAGCACAGACCAAAGAACACCTGCAGATGTTGATGTCATTGCTCTTTAG 1104 0.4918 MEDLNQNVAVTDSPSLTLNKPQTNNETPVQTNYGENNAALEGVGVENVVSGSVISGAKSENGGSEPVVKRGRGRPRKYDVNGKLLSSPATPPPPPGFDIQPYVESVVKRGRGRPRGTGKLQILASMGGYVAETAGGSFIPHVLTVNAGEDVVNKIISFFQKGPRSVCILSANGPVSSVTIRQPGPAGGFLRYEGIFEILSLSGSCTYTGAGGALRKSGMLSVSLAKPDGRVFGGGIESSLIAAGPIQLVLGTFKQNITNKNKKRHSSAAAAAAANMAGNPDHLKVPKLMEGEQSYPSPISAIRPAATTTNGVADKAIPATTDVVADYVNPDDNNVHSDSVSGVDLEYQILQPSTDQRTPADVDVIAL. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04305 367 CDD DUF296 140 253 IPR005175 -
Seca4g04305 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 292 IPR039605 GO:0003680
Seca4g04305 367 MobiDBLite consensus disorder prediction 65 79 - -
Seca4g04305 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 258 - -
Seca4g04305 367 Gene3D - 140 270 - -
Seca4g04305 367 SMART AT_hook_2 69 81 IPR017956 GO:0003677
Seca4g04305 367 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Seca4g04305 367 MobiDBLite consensus disorder prediction 54 98 - -
Seca4g04305 367 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g04305 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 254 IPR005175 -
Seca4g04305 367 Pfam AT hook motif 69 78 IPR017956 GO:0003677
Seca4g04305 367 Pfam AT hook motif 108 118 IPR017956 GO:0003677
Seca4g04305 367 ProSiteProfiles PPC domain profile profile. 135 274 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04305 Seca-Chr4 78166136 78170178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04305 67 263 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.190 1.14e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04305 - - gsj:114378162 307.76