Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04304 ATGGAACCCCCGGTTGCGAGATCGAGGGGTCGCCCGAGGAAACGAAGAAAAGAGGACGAAAATGAAGGGAAATCGGTTCCAGAAGCAAAAAGGACGAGAACGATAGCATTGGTTGGGCGATATGTGCTGAAAGAGTTCCCCAGAAATGGAGTTTTTCTCGGTAAAGTTGTATATTACGAGTGTGGGTTGTATAGAGTCAATTACGAGGATGGTGATTCTGAGGATTTGGATAGCGGTGAGGTTCGTGCGATACTTCTCAGTGACGGTGATTTCAATGGTGATTTAGCAAAGAGGAAAGGCAAATTGGAGGAATTAGTGTCACGGAATAGTTTAAAGGCTGCAGAGGTGTCGAGGAAGAATTCTGATGACCTGAACAAGGAGGAATCAGCTGTTGAAGTGCCTGTTTCCAATGAATTGAACGGTGGATTATCGGTGGAAAACAATGAGGGAGAGGATGATGAAGCGGATGTTGATTCGTCGAGTGAAAAGGATTCTGGGTCTGATGCTGAGACGCCGCCACTGCCACCGCCTTTGCAGTTGCCACCGTCGTCAGGGACTATTGGCGTGCCTGATAAATGTGTCTCACACCTGTTTGCTGTTTATGGATTCTTACGATCATTCAGCACTCGCCTGTTTCTACTACCCTTTTCTTTGGATGAGTTTGTTGGTTCTCTTAATTGCCAAGTCGCGAACACCTTGTTTGACGCCATTCATGTTTCCCTACTGAAGGTGTTGAGCCGCCATCTTGAAACCCTCTCATCTGAGGGCTCAGAGCTTGCATCGCAATGCCTTAGGTGCAACGATTGGAGCTTGCTTGATACATTGACTTGGTCTGTTTTTGTGATTCAGTATTTAGTAGTTAATAGATACACAAAAGGACCTGAATGGATAGGATTTTATGATGAGGTTTTTAATGGCGAGTATTATTCATTGCCAGTTAGTAGGAAGTTAATGATATTGCAAATTCTTTGTGATGATGTTTTGGATTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTAAAGAATTAGAGGTTGGGATGGATTATGATGATGCAGAAGATATTCTTCCTGCAGAAACTGGGTCAAGAAAAGTCAATGCAAGATATGCCAAGACTTCATTTTGTGAGGATAAAGAAGCTATGAAATTTGTTTCAGCATCAAATGCTGTGAACCAGCCTGGTAACTCTATTTCATATGTTAAAAATACAGAGAGCACTGAGAATGGTGATGTTGAAAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGAACCCTGTTTTGCTGTGATGGTTGTCCCTCTGCTTATCATCTTAGGTGTATTGGTGTGATGAAAGTGCATATACCAGAAGGACCATGGTATTGTCCAGAGTGCAAAATTAATATGACTGGGCCAACAATTACAAGGGGAACATCACTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGACCACTTACTTGTGCTCAATGTTGACAAAGATGAATTTCATCTTAAATATTACAATCAGAATGACATTCCTAAAGTGATCCAAGTACTCTATGAATCCATGCAGCATAGACCAATATACTATGGTATTTGCATGGCAGTGCTACGATATTGGAGTATTCCAGAAAATTTCTTACCTCTTTCTGTTTCAGCTGGAACAAATGTAAACCCAACAAATATAAAGGAAGAGGCAAAATTCTCTACTTCATTCTTTCCTCCTCTAAGTGAAGACAACCAAAAACCTGTTAGTTTGGTGAAGGGAGAATACCCTCCAATTGACAGTGATAATATGGTGCCGTCACTTGATGCTTCATCAGTTATCACTCAAAGTCCTGCTCCTGAAAGCAGTGGCAATGCTAGTAGTAAAGAGTGCCCTACTGTGGATATGAAGCTTCCTGAGGAAACCAGGACCGAGTCAGTCATTTCAGCCGGTTCTGTTTCTGTTTCTGTGAGTCATCAGTCTGACATACACTATCACAATTCTGTTAATATGTCAACTGCAGCTGATCCTGCTAAGTGCTCTTTGGTAAACAGCCGGTTTAGTAATAATGGCCATGCAAATGATATGGGGTTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAACACCCAAGTCGGTTTTGGAAAGTGTGAACTCAATGTAACTAGCGATTTTGGGTACATGGGTTCCTCCTATAAACCTCTGTCTTACATAAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAACTTGCCATTCTTTCTTCAGAGGAATCTAGGTCAGATGGTCATGTGTCAGACAATCAGAGGAAAACTGCATCTGCAATCACTTATCTTCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCCAGTTCTGAGAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTTGCTGGTGCTTTTCTTGTAAAGCCTCTGTTTCTAGCAAAAGAGGATGCATGTTAAATCATGCTGTTATAAGTGCCACAAAAAGTGCTACAAAAATCCTTGCTGGTTTTTCTCCCTTAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACTTACATTATATACATGGAGGAATGTTTACATGGTTTAATAGTTGGGCCCTTCCTAAGTGCAAGGTATAGAAAGCAATGGCGTAAGCAAGTGGAACAAGCTACAACATTTAGTGCTATCAAGCTGCTTTTACTTAAACTTGAGGAGAACATTCGAATCATTGCCTTTTCTGGGGACTGGGTTAAGCTGATGGATGATTGGTCAGTTGAATTTCCCATGATACAAAGTGCTGCATCTACTCTTGGAACAACTCAGAAACGTCCACCAAGTGGGAGGCGTTACAAGAAGAGGTCATCTGTTGATGAAGCTACAACTGATGGTTGCCATGAAAACTTTGTGTGGTGGCATGGTGGCAGATTTGCTAAATTTATATTCCAGAAAGCGACATTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTGAAAAAAATTGCTGGTATTTTCTATGCTGATGGCTCTGAAATTCCTAAAAGAAGCAGGCAGCTTGTTTGGAGATTTGCAGTCCAATTGAGCAGGAATGCATCACAGCTAGCACTTCAGGTCAGATATCTAGATTTTTACCTCAGATGGAATGATCTGATTCGTCCAGAGCAGAACATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACACAAGATTTGTAGAGGGAAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCGTCTTCCTTCTCGGATGATGAAAAATGTTGTTGAAATAGAGCAATGTGCAGAAGGAAGGGAGAAGTATTGGTTTTCTGAAACACGCATTCCTTTATACTTGATAAAAGAGTATGAAGAAGCTAATGAAAAAGTTTCATGTGATGAAGAGCACTATAGTGATGCATTTCCATTGCACAGAAGGCGATCGAAAGTTACCTGCAAGAACATATTTTATTACCTTACCTGCAAGAGAGACAACTTGGACATATTCTCATGTTCTGGATGTCAGATGGATGTTTCAATTCGGTATGCTCACAGGTGTGGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCCATAAGTTCAGTCTCTACAAACAAGGAATTTGGGTACATGACCACATGCAAACAGTGTTACCATGCCATGTTACTTGCTCCAAAAGAGACTAATAATGAATCTCCGACCAGTCCCTTACTCTTACAAGGTCGAGAAAATGGCTCTGGGACTGTTTCTAATGGACGGAGGACAAAGGCTAGTCATCCTGACATGAAACAAGCTACTTCAGTGACAGTTTTGAAGGCACCAAGGCCTAAACGTCATGATCAAACACCGAAAACTACCAGGATAAAGAATAGCCGTCCTGGAACAAAACAAGTTGCTTCTGATTCTGCAAAAAGCCGTCGCAAGAATTGTTCTTGGGGTCTTATATGGAAAAAGAAAAGTAATGAAGATATTGACATTAATTTTAGGACCAAAAACATACTTTTAAAGGGTGGATCTGGGATGCCTCAATCGGGTTTGGAACCACCTGTTTGTCACTTGTGCCGCAAGCCATATAGGTCTGATCTAATGTATATTCGTTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTCTGGATTTATTGGGCTTCAAATGTTGCAAGTGTCGTAGGATAAAATCACCTGTATGTCCTTACTTTGAGCCTAAGGAGGGTAAGAAATCACACACAAGGGCTTCAAAGAAAGAGCATTCAGGAGCAGATTCTGATTCTGGAACATTTACTGATATGAAAGAGCGTGAACCTGCTACTCCCGTCTTTCCTGTGGAGGACGATCCTTTACTTTTCTCTCTTTCAAGTGTTGAGCTGATTACAGAACCTAAGTTAGATGTGGATGCTGAGTGGAACACTGTCTCTGTGCCTGGGCTTCAGAAACTACCAGTGAGAAGGCATGTTAAGCGTGAGGGGGATGGTGATGGTTCTGTTGGAGGTATACCTTTAGATGCTGAATTCTCAACATACAATGAAGCTGGTAATCTGTCCAAATCTGCAGATTCATTATCACCTTTAGAATATGACCCTGCTATGCACTTTGACAGCAATTTACTGAACAACTCTGAAAGTCTAAATTATGAATGCATGGAGTTTGAACCCCATACCTACTTCTCTTTAACGGAACTGCTGCACCCAGATGATGGTAGCCAGTTTGAGGGAGTTGATGTATCTGGGGACTTGTCAGGATATTTGGGAAGTTCTGGTACCCTTGTTCCTGAACAATGTGGAGGTGTTAGTTCAATCGATAAATCAGAACCTGCAATTTCCTTACAAGATAGTGATTATAGTTGTCAGAAATGTTCACAAATGGATCCAGTCCCTGATCTCTGTTGTGAGTTTTGTGGGATTTTGTTTCACAGCCAATGTTCACCTTGGGTGGAATCACCATCTGGGCTTGGAAATTGGAGGTGTGGGAATTGCCGGGAATGGCAATAG 5061 0.4175 MEPPVARSRGRPRKRRKEDENEGKSVPEAKRTRTIALVGRYVLKEFPRNGVFLGKVVYYECGLYRVNYEDGDSEDLDSGEVRAILLSDGDFNGDLAKRKGKLEELVSRNSLKAAEVSRKNSDDLNKEESAVEVPVSNELNGGLSVENNEGEDDEADVDSSSEKDSGSDAETPPLPPPLQLPPSSGTIGVPDKCVSHLFAVYGFLRSFSTRLFLLPFSLDEFVGSLNCQVANTLFDAIHVSLLKVLSRHLETLSSEGSELASQCLRCNDWSLLDTLTWSVFVIQYLVVNRYTKGPEWIGFYDEVFNGEYYSLPVSRKLMILQILCDDVLDSEELKAEMNMRKELEVGMDYDDAEDILPAETGSRKVNARYAKTSFCEDKEAMKFVSASNAVNQPGNSISYVKNTESTENGDVERNGDECRLCGMDGTLFCCDGCPSAYHLRCIGVMKVHIPEGPWYCPECKINMTGPTITRGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNVDKDEFHLKYYNQNDIPKVIQVLYESMQHRPIYYGICMAVLRYWSIPENFLPLSVSAGTNVNPTNIKEEAKFSTSFFPPLSEDNQKPVSLVKGEYPPIDSDNMVPSLDASSVITQSPAPESSGNASSKECPTVDMKLPEETRTESVISAGSVSVSVSHQSDIHYHNSVNMSTAADPAKCSLVNSRFSNNGHANDMGLPMNFSLQTKENTQVGFGKCELNVTSDFGYMGSSYKPLSYINYYMHGDFAASAAAKLAILSSEESRSDGHVSDNQRKTASAITYLQAKAFSLTASRFFWPSSEKKLVEVPRERCCWCFSCKASVSSKRGCMLNHAVISATKSATKILAGFSPLRSGEGILPSIATYIIYMEECLHGLIVGPFLSARYRKQWRKQVEQATTFSAIKLLLLKLEENIRIIAFSGDWVKLMDDWSVEFPMIQSAASTLGTTQKRPPSGRRYKKRSSVDEATTDGCHENFVWWHGGRFAKFIFQKATLPKSMVRKAARQGGLKKIAGIFYADGSEIPKRSRQLVWRFAVQLSRNASQLALQVRYLDFYLRWNDLIRPEQNIQDGKGQETEASAFRNANICDTRFVEGKSCYGIAFGSQKRLPSRMMKNVVEIEQCAEGREKYWFSETRIPLYLIKEYEEANEKVSCDEEHYSDAFPLHRRRSKVTCKNIFYYLTCKRDNLDIFSCSGCQMDVSIRYAHRCGACQGYCHEGCSISSVSTNKEFGYMTTCKQCYHAMLLAPKETNNESPTSPLLLQGRENGSGTVSNGRRTKASHPDMKQATSVTVLKAPRPKRHDQTPKTTRIKNSRPGTKQVASDSAKSRRKNCSWGLIWKKKSNEDIDINFRTKNILLKGGSGMPQSGLEPPVCHLCRKPYRSDLMYIRCETCQNWYHAEAVELEESKILDLLGFKCCKCRRIKSPVCPYFEPKEGKKSHTRASKKEHSGADSDSGTFTDMKEREPATPVFPVEDDPLLFSLSSVELITEPKLDVDAEWNTVSVPGLQKLPVRRHVKREGDGDGSVGGIPLDAEFSTYNEAGNLSKSADSLSPLEYDPAMHFDSNLLNNSESLNYECMEFEPHTYFSLTELLHPDDGSQFEGVDVSGDLSGYLGSSGTLVPEQCGGVSSIDKSEPAISLQDSDYSCQKCSQMDPVPDLCCEFCGILFHSQCSPWVESPSGLGNWRCGNCREWQ. 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04304 1686 Pfam DDT domain 192 247 IPR018501 -
Seca4g04304 1686 CDD Tudor_AtPTM-like 38 86 IPR047365 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 13 29 - -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1303 1321 - -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1 29 - -
Seca4g04304 1686 ProSiteProfiles Zinc finger PHD-type profile. 415 462 IPR019787 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 941 960 - -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 114 185 - -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 612 629 - -
Seca4g04304 1686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 467 IPR013083 -
Seca4g04304 1686 SMART PHD_3 417 460 IPR001965 -
Seca4g04304 1686 SMART PHD_3 1366 1414 IPR001965 -
Seca4g04304 1686 SMART PHD_3 1638 1683 IPR001965 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 115 129 - -
Seca4g04304 1686 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 305 338 IPR028942 -
Seca4g04304 1686 ProSitePatterns Zinc finger PHD-type signature. 418 459 IPR019786 -
Seca4g04304 1686 SMART testlast3 191 251 IPR018501 -
Seca4g04304 1686 SUPERFAMILY FYVE/PHD zinc finger 1365 1420 IPR011011 -
Seca4g04304 1686 PANTHER PHD FINGER FAMILY PROTEIN 33 1650 - -
Seca4g04304 1686 Pfam PHD-finger 418 460 IPR019787 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1426 1455 - -
Seca4g04304 1686 SUPERFAMILY FYVE/PHD zinc finger 1633 1684 IPR011011 -
Seca4g04304 1686 ProSiteProfiles DDT domain profile. 191 251 IPR018501 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1426 1454 - -
Seca4g04304 1686 SUPERFAMILY FYVE/PHD zinc finger 388 461 IPR011011 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 612 632 - -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1244 1281 - -
Seca4g04304 1686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1355 1430 IPR013083 -
Seca4g04304 1686 MobiDBLite consensus disorder prediction 1244 1321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04304 Seca-Chr4 78084964 78096661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04304 281 547 EF-hand Containing Proteins AT5G22760 49.265 6.16e-74 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca4g04304 DDT 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04304 - - lang:109351702 2308.1