Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04293 ATGGAACCATCAAAACAATGGGAAACATATGCTCTGAATATATGGCAGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCATAGAAGACGGAGATCAACAGCAAAAGGCATTTGATGATGCAAATTACTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTAAGGATGAGGATGAGGATGGAGAGGACAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATATCTTATCTAGAATTGCAATATTTGGGATAACCCCATCTAGACTTTCCAGATTGTACTCAAATAGCCAAATCAGTTTTCCAAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAATTGCAAAAGCAGGTATCCCCATGCCTCTAGTTGAGCAAAAGAACCCTTTCAGTTTTGAGAACTCAAAATTAAGAGCAACAGCTTGCAATTGGTGGAATCAAGTGAGCATGTGTCTGTCAGGGTATGAAATTAAGCAAGGAAATCAAGGTGGCAACACCTTGGAGAAAACTGATGCAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGTAA 786 0.4211 MEPSKQWETYALNIWQHVVKKSGWKDLEQSGGIEDGDQQQKAFDDANYSSSAIEGKSNSKKRRDIKDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDILSRIAIFGITPSRLSRLYSNSQISFPKAVPKKILELMNVPGLTRENVASHLQLQAQSLAKLQAAGLGRSIAKAGIPMPLVEQKNPFSFENSKLRATACNWWNQVSMCLSGYEIKQGNQGGNTLEKTDATGENVNGEDAIDVDDNDETIDWILKQ. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04293 261 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 42 159 IPR044841 GO:0003700|GO:0006355
Seca4g04293 261 Gene3D - 79 168 - -
Seca4g04293 261 MobiDBLite consensus disorder prediction 27 78 - -
Seca4g04293 261 SUPERFAMILY Homeodomain-like 81 160 IPR009057 -
Seca4g04293 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 159 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04293 Seca-Chr4 77947670 77949133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04293 13 201 Response Regulator Gene Family AT3G16857 40.530 5.62e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g04293 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04293 - K14491 hsyr:120123770 174.096