Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04234 ATGGAGAGGAATGGGATGAGCAATGATTACAGTTCAGAGGACGAAGGCACTGAGGGTTATAGGCGTGGAGGATACCATGCAGTTCGAGTTGGTGACACTTTCAAGAATGGCTGCTATGTCGTGCAGTCCAAGCTCGGTTGGGGTCATTTTTCCACTGTCTGGCTCGCTTGGGACACTCTCCATTCGCGTTATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCGATGGATGAAATAAAGATTCTTAAACAAATTGCAGAGGGAGACCCTGATGACAAGAAATGTGTTGTGAAGCTTTTGGATTACTTTAAGCATTCGGGGCCTAATGGGCTGCATGTGTGTCTGGTTTTTGAATTTCTTGGTGACAATCTTCTCACCCTTGTCAAATACAGTGACTATCGTGGGGTTCCTCTCCCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTAGATTACTTGCACCGTGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAGATCCATACAAGGATCCTAGGAAATCAGGTGCTCCACTTATCCTTCCAACTACTGAGGATAAAGCTGTGTCTAATAATGAGACTACCAAGGACAATAAAATTTTGAATGGAGATCTGATGAAGAACCAGAAAAAGAAAATGCAGAGGAAGGCTAGGAAGGCAGCTCAAGGCTGTGTTGAGAAGGAAAGTCCAGAGGAAGCTGAGGAGGATTATAAAGAACCGGAGGAAGAAGATTGTATTAATGGTATGCAATCAAGTGTAGAATCTGTTGAAGATAAACTTAATACTTCATTGAGTGAAGGTGAATCAACAAAAACTGTTGAGAAGGATGTTTCACAAGGAAGTCATGGTCACAGGAGCCGTTCCAAGGGAAAGAAGTTGCTGGCGGCTGCTGATCTTAAGTGCAAGCTGGTTGATTTAGGTAGTGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCGGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGGGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGGGATGAGAAATTTGTTTTACAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCCCGAGAGTTTTTCAATAGGCATGGTGACTTGAGGCACATTCGCAATTTGCGATTTTGGCCAATTAATAAGGTGCTGACGGAGAAGTATGATTTCAGTGATCAAGATGCAAATGACATGGCTGACTTCCTTGTTCCAATACTTGATTTTGTCCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATCAGTGCAGGTCCTCGGACCCTTGAGCCCTCAATGACAATTATGCAACCGGATACCATCAATGAGGAATTGTCTGAAACGAGGAAGAGGGAAAAGGCTGAGCAAGAGTTACTGGAAGTTGGTGTGAGGAATATAGCCATTAATGGAACTCCTGAGTTACTCAAGGACTCCCAACCTCTAAAGTCATCGAAATAG 1638 0.4347 MERNGMSNDYSSEDEGTEGYRRGGYHAVRVGDTFKNGCYVVQSKLGWGHFSTVWLAWDTLHSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDYFKHSGPNGLHVCLVFEFLGDNLLTLVKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLIDPYKDPRKSGAPLILPTTEDKAVSNNETTKDNKILNGDLMKNQKKKMQRKARKAAQGCVEKESPEEAEEDYKEPEEEDCINGMQSSVESVEDKLNTSLSEGESTKTVEKDVSQGSHGHRSRSKGKKLLAAADLKCKLVDLGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGENYDRDEKFVLQDHLALMMELLGMMPRKIALGGRYSREFFNRHGDLRHIRNLRFWPINKVLTEKYDFSDQDANDMADFLVPILDFVPEKRPTAAQCLSHPWISAGPRTLEPSMTIMQPDTINEELSETRKREKAEQELLEVGVRNIAINGTPELLKDSQPLKSSK. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04234 545 FunFam Serine/threonine-protein kinase SRPK-like protein 307 482 - -
Seca4g04234 545 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04234 545 Pfam Protein kinase domain 309 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04234 545 Gene3D Transferase(Phosphotransferase) domain 1 311 482 - -
Seca4g04234 545 MobiDBLite consensus disorder prediction 236 305 - -
Seca4g04234 545 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Seca4g04234 545 ProSiteProfiles Protein kinase domain profile. 39 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04234 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Seca4g04234 545 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 504 - -
Seca4g04234 545 Gene3D Transferase(Phosphotransferase) domain 1 93 186 - -
Seca4g04234 545 MobiDBLite consensus disorder prediction 264 284 - -
Seca4g04234 545 FunFam CMGC/SRPK protein kinase 25 124 - -
Seca4g04234 545 CDD STKc_SRPK 28 482 - -
Seca4g04234 545 SUPERFAMILY Protein kinase-like (PK-like) 34 498 IPR011009 -
Seca4g04234 545 SMART serkin_6 39 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04234 545 MobiDBLite consensus disorder prediction 285 299 - -
Seca4g04234 545 Gene3D Phosphorylase Kinase; domain 1 25 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04234 Seca-Chr4 76168214 76172574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04234 2 531 EF-hand Containing Proteins AT5G22840 68.148 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca4g04234 Pkinase 7.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04234 K08832 - gmx:100790060 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04234 4 76168214 76172574 Seca4g04234 4 76168214 76172574 ECH
Seca4g04234 4 76168214 76172574 Seca4g09294 4 220618713 220624285 PCT