Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04229 ATGACTTTTGAAATTTGTGTCCGGTTCTCTTCCTTTTCCACGCGACGGTTACTTCTCACTGGTACTATACTATATATATATATATATAGTACCCTCACCCTCACTCCACAAAACCACCCTCTACCTTTCGCATTCCAAATCCAATTCCGCACTCTCTCAGAAACTTCTACTTTGCCTTTACTTCCAAGTTCTAACTGCTCCACAATGTCTCGCCGTGGTGGTGGTAGGCAATCCCAATCTCGCTATGATCAACCTTCTCCGGCCCAGTCTGCCGGAAGAGGCCGTGGTCGCGGCCGTGGACATGCACCTCCTCCGCCGTCGTCCGTTCCTATTCCGTCTCCGGCGATCGGTTATTCATCTGCCGCAGCGCCTGTTGCTGCCTCAAGTTCATCGTCCGTTCCTCTTCCGTCTCCGGCGATCGATTCTTCCTCCGCTGCAGCGCCAGTTGTTGCCTCAAGTTCGTCGTCTCCGCTGCCGTCTCCAGTTCCGGTTGAAACTCTGACTTCAGAGGTTGAGCAGAAGCTCACATTGCAGCCGCCGGCTCCGTCGTCGGCGAAGGCTATCAGGTTCCCTGACCGGCCAGGTTACGGTAAAGCGGGAAGGAAAATCCAAGTCCGGGCGAATCATTTTCAACTGCAAGTTGCTCAGTGTGATCTACATCACTATGATGTATCGATAACTCCGGAGATTCCTTCGAAGAAAGTGTCTAGAGATGTGCTGGGCCAGTTAATCCGCATGTATCAAGAGTCACACTTGGGTAGGCGTGTACCGGCTTACGATGGACGGAAGAGTCTTGTTACTGCAGGTCCATTGCCCTTTTCCTCGAAGGACTTTGTGGTCAGGTTGGTTGACGATGACGACCGAGGCTCGTCTTCTGGTTCTGCTAGAACAAAACGTGAGCGCGAGTTCAAGGTCACTATACGGTTCGCTGCAAGGGCTGACCTTCACCATCTTCAGCAGTTTCTCAGGAGCCAACAGCTGGACAGTCCACAGGAAACCATACAAGCACTTGATATTGTTTTGCGGGCAACACCATCTGAGAAGTATAATGTTGTGGGAAGGTCATTTTTTTCTCCCACTTTGGGGTTAACAGGTACACTGGGTAGTGGGACAGAATATTGGAGAGGATATTATCAAAGCCTTCGCCCAACCCAGATGGGACTTTCCCTCAACATTGATGTTTCAGCGAGAGCTTTTTATGAACCAGTTCTTGTTACTGAATTTATTGCGAAACATTTTAGATTAAATTTTTCAAGGCCTCTGTCTGATCAAGACCGTGTTAAGGTTAAGAAAGCTCTGAGAGGTATAAAGGTGATACTTAGTCATGGCAAGTATATTAGAAGTTATAAAATTACTGGAGTTTCCAAAGAACCTCTCCAGGCGTTAATGTTTACACTTGATGACAAAAGAACAAAAGTTTCGGTTGTTCAATATTTCCGTGAGAAATACAATATTGTGTTAGAGTGTTTGGCTCTTCCTGCTCTCCAAGCTGGAAGTGACACAAAACCTATTTATTTGCCTATGGAGCTTTGTCAGATCACAGCTGGACAGAGATACACTAAAAGATTGAATGAAGAACAAGTGACTAATCTTCTAAGGGCTACCTGTCAGCGTCCTCATGAAAGGGAAAACTACATTAAACAGATTGTGAGGGAGCACAATTTCAACACAGACAAGTTTGTGCGTGAGTTTGGGATTAATGTAAGGGAGGATCTTGCGTTGGTTGATGCCCGTGTTTTGCCTACCCCAACGCTTAAATATCATGAATCAGGCAAAGAATCTAAAGTTGACCCAAGGATGGGTCAGTGGAATATGATTGACAAGAAAATGATTGATGGTGGCAAGGTGCAATATTGGACTTGCCTAAACTTTTCAGCGAAAGTAAACAGAGAAAGAGACTGGGCAGCTAGATTTTGTAGTGAATTGGTCTATATGTGTACAAGCAAGGGAATGCTATTCAATCGAGACCCTTTGATTCCCATAACTTCAGGTTACCCTAATCAAATAGAGACAGCACTCATGAACGTCCATAAGCAGAGCATGTCAAAACTTGCAAACTTGAAGCAGGGGGGGCCAATTCAGTTGTTAATTATAATTCTGCCTGATGTCAAGGGCTCTTATGGAAAAATAAAGAGAATATGTGAAACAGAACTGGGGATAGTATCTCAATGTTGTCAACCCAGGCAAGTTTTAAAGTTGAATAAGCAGTATCTTGAAAATGTGGCCCTGAAGATTAATGTTAAGGTTGGTGGTCGTAATACTGTGTTAAATGATGCAATTGAAAGAAGAATCCCCCATGTGACTGATGAACCAACGATAATATTTGGTGCGGATGTTACACATCCACAGCCAGGGGAAGACTCAAGTCCTTCTATAGCTGCAGTAGTGGCTTCCATGGATTGGCCTTGGGTTACAAAGTATAGGGGAATTGTTTCTGCCCAGCATCACCGCCAAGAAATTATTCAGGATCTTTATAAAATACATGAAGATTCTAAGAAGGGTATTGTACATGCTGGAATTGTCAGGGAGTTAATCCGATCCTTCTATAAATCAACTGGGCATAAACCTCGAAGAATTATATTCTACAGAGATGGAGTGAGTGAGGGACAATTTAGTCAGGTTTTGCTTTATGAGATGGATGCAATCAGAAAGGCTTGTGCCTCGTTAGAGGATGAATATCTACCTCCAGTTACATTTGTGGTGGTACAGAAAAGACATCACACCCGTCTCTTCCCTGTTGATCGTAATCAGATGGATAGAAGTGGAAATATAATGCCAGGGACTGTTGTTGACACATCCATCTGCCACCCTCGGGAATTTGACTTTTATCTCAATAGCCATGCTGGAATTCAAGGAACTAGTCGACCAACTCATTATCATGTATTGTATGATGAAAACCACTTCACTGCGGATGAGTTGCAGATTTTGACAAATAATTTATGTTATACGTACGCAAGGTGTACTCGGTCGGTTTCAATAGTTCCTCCTGCATACTATGCACACTTGGCTGCTTTCCGAGCTCGATACTACATTGAAGGTGAAACTTCGGAAGCTGGTTCTGCGAGTGGAAGTGGAAGCAGGAATACCAACGTCGATGTGACACTGCCCTCAATCAAGGAAAATGTCAAAGAAGTTATGTTTTACTGCTGA 3150 0.4438 MTFEICVRFSSFSTRRLLLTGTILYIYIYSTLTLTPQNHPLPFAFQIQFRTLSETSTLPLLPSSNCSTMSRRGGGRQSQSRYDQPSPAQSAGRGRGRGRGHAPPPPSSVPIPSPAIGYSSAAAPVAASSSSSVPLPSPAIDSSSAAAPVVASSSSSPLPSPVPVETLTSEVEQKLTLQPPAPSSAKAIRFPDRPGYGKAGRKIQVRANHFQLQVAQCDLHHYDVSITPEIPSKKVSRDVLGQLIRMYQESHLGRRVPAYDGRKSLVTAGPLPFSSKDFVVRLVDDDDRGSSSGSARTKREREFKVTIRFAARADLHHLQQFLRSQQLDSPQETIQALDIVLRATPSEKYNVVGRSFFSPTLGLTGTLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEPVLVTEFIAKHFRLNFSRPLSDQDRVKVKKALRGIKVILSHGKYIRSYKITGVSKEPLQALMFTLDDKRTKVSVVQYFREKYNIVLECLALPALQAGSDTKPIYLPMELCQITAGQRYTKRLNEEQVTNLLRATCQRPHERENYIKQIVREHNFNTDKFVREFGINVREDLALVDARVLPTPTLKYHESGKESKVDPRMGQWNMIDKKMIDGGKVQYWTCLNFSAKVNRERDWAARFCSELVYMCTSKGMLFNRDPLIPITSGYPNQIETALMNVHKQSMSKLANLKQGGPIQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPRQVLKLNKQYLENVALKINVKVGGRNTVLNDAIERRIPHVTDEPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGIVSAQHHRQEIIQDLYKIHEDSKKGIVHAGIVRELIRSFYKSTGHKPRRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEDEYLPPVTFVVVQKRHHTRLFPVDRNQMDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENHFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSEAGSASGSGSRNTNVDVTLPSIKENVKEVMFYC. 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04229 1049 Gene3D - 763 1049 IPR036397 GO:0003676
Seca4g04229 1049 MobiDBLite consensus disorder prediction 60 115 - -
Seca4g04229 1049 SMART PAZ_2_a_3 403 534 IPR003100 GO:0005515
Seca4g04229 1049 Gene3D - 579 758 - -
Seca4g04229 1049 Pfam Piwi domain 696 1011 IPR003165 GO:0003676
Seca4g04229 1049 SUPERFAMILY PAZ domain 398 555 IPR036085 GO:0005515
Seca4g04229 1049 CDD PAZ_argonaute_like 405 513 - -
Seca4g04229 1049 Pfam N-terminal domain of argonaute 201 341 IPR032474 -
Seca4g04229 1049 Pfam Mid domain of argonaute 598 678 IPR032473 -
Seca4g04229 1049 FunFam protein argonaute 10-like 763 1049 - -
Seca4g04229 1049 SMART DUF1785_2 350 402 IPR014811 -
Seca4g04229 1049 Pfam Argonaute linker 2 domain 541 587 IPR032472 -
Seca4g04229 1049 Gene3D paz domain 397 519 - -
Seca4g04229 1049 ProSiteProfiles PAZ domain profile. 403 515 IPR003100 GO:0005515
Seca4g04229 1049 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 180 1013 - -
Seca4g04229 1049 MobiDBLite consensus disorder prediction 60 87 - -
Seca4g04229 1049 Pfam Argonaute linker 1 domain 352 401 IPR014811 -
Seca4g04229 1049 SMART Piwi_a_2 695 1012 IPR003165 GO:0003676
Seca4g04229 1049 Pfam PAZ domain 428 532 IPR003100 GO:0005515
Seca4g04229 1049 CDD Piwi_ago-like 559 1011 IPR045246 -
Seca4g04229 1049 ProSiteProfiles Piwi domain profile. 695 1012 IPR003165 GO:0003676
Seca4g04229 1049 FunFam Argonaute 10 579 757 - -
Seca4g04229 1049 SUPERFAMILY Ribonuclease H-like 684 1012 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04229 Seca-Chr4 76080753 76086960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04229 145 1049 Eukaryotic Initiation Factors Gene Family AT1G48410 58.511 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04229 K11593 - gmx:100799033 1313.13