Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04228 ATGTGCAGCAAATCGACCAATCCCAATGACACCATTTTGTGGAGCTCCACCAACACCAGCTTCGTCGTTTGGAACCCTCCTAAGTTCGCTCGCCTTCTTCTCCCAACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGTTAG 147 0.483 MCSKSTNPNDTILWSSTNTSFVVWNPPKFARLLLPTYFKHNNFSSFIR. 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04228 48 Gene3D - 1 48 IPR036388 -
Seca4g04228 48 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 48 IPR027725 -
Seca4g04228 48 SUPERFAMILY "Winged helix" DNA-binding domain 7 48 IPR036390 -
Seca4g04228 48 Pfam HSF-type DNA-binding 7 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04228 Seca-Chr4 76071284 76071430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04228 9 48 HSF AT3G02990 67.500 1.42e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca4g04228 HSF_DNA-bind 3.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04228 K09419 - gmx:100816484 80.8777