Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04213 ATGGAATTCTACACCCGCAAATTGCTCCTAGTGAACGAGGACGTTCCGATCTCAACTTCCATTTCCCCTTTCCCTCACATCCAGGTCACCGAACCCACCGCCACAAACTCATCCACACCGAGAGAATCAACAGCGACCTCGCCATCTTCATCAACGTTTAGAACCCCTCTGCAACTTCCCCTGCGTCCGATTTTCACTTCCAACGTCGCCTACACCTTCCTCGTCCTCTTCACATCATTCTTCTTCCTCGCCTTCGTCCTCTTGTCCATTCATCAATTCTCATTCCGCCGTCGCCGCCGTCCTCCGTCGTCTTGCCAGGGTGATGAACTCGCCGCCGGGAAGTCTCTGCCGGTAACTTCGTACCGCGGAGACGCGAAGCAAGTGGAGTGTGTGATATGTCTGGAGGAGTTCCGAGAGGGGGACATGGTGAAGGTGATTCCGTACTGCACGCACGTGTTTCACCCTGAATGTATTGACACATGGCTCGCTGCGCACGTGACGTGTCCTATTTGCCGGTGCGGTGGGATCGCAGATGAGCGTGAGGGAGGATCGACGGTGGAGATTGAACGAGAAGAGGTGGGGTCGGGGTGA 591 0.555 MEFYTRKLLLVNEDVPISTSISPFPHIQVTEPTATNSSTPRESTATSPSSSTFRTPLQLPLRPIFTSNVAYTFLVLFTSFFFLAFVLLSIHQFSFRRRRRPPSSCQGDELAAGKSLPVTSYRGDAKQVECVICLEEFREGDMVKVIPYCTHVFHPECIDTWLAAHVTCPICRCGGIADEREGGSTVEIEREEVGSG. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04213 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 175 IPR013083 -
Seca4g04213 196 SUPERFAMILY RING/U-box 129 173 - -
Seca4g04213 196 MobiDBLite consensus disorder prediction 29 54 - -
Seca4g04213 196 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Seca4g04213 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 174 - -
Seca4g04213 196 SMART ring_2 130 171 IPR001841 -
Seca4g04213 196 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04213 Seca-Chr4 75588980 75589570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04213 65 183 C3H Transcription Factor Family AT2G27940 35.811 4.66e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04213 - K10664 mtr:25492360 205.682