Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04212 ATGGCTATTGCTGGTCTGCGTAGTGTGTCTGTACTCGATCCTTCTTTCCTCAGGGACTCCCATTCTCAGTCATCCAGGAGAGGGGGAGATGGAAGAAGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAGGATGAACATGTGGTGAGTCAAGTTCAAGGAAGAGCTAGTGAAGTACTACTTGAACAAAGGAGTGATGGATTGACTGCAGACCTCTCGCAGGAGGATACACTTGATAGCCAAGAATTAGGACAGGGGAATGTTTTAGAAGATGCAGTTTTGGGCGAGAATGAGTCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATGATGGTCATGAGGATTTAAACAATTCCAGCTGTGAAAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATCTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGGATCAAACATTTCCCGAAGAAATAACAGTTCAAGGAGAGAATGGCTCGGCGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCTTCTGGGGAAAACAGGGAAGAACTATCTGCTGAAATTGATACACAAATTGAACGTGTACGTGATGGACTTGTCATTAACCAGAGTGAGGGCCAAACTGAGCATATGCGGAGGAGTATCCGTAAATTATGCGGCAGACAGGTTATGCTTGATATGCTCAAGAAGGCTGAGAGGGAAAGGCAAAAAGAAATTCAAGAGTTGTTGGACCATCGGGCTGTTTCTCATTTCCCCCATCGTAATCGCATCCAGGCATTGCTTAGAGGACGGTTCTTGAGGAATGATAGATCTGTTGACCATAACAGGTCCACTTCTGTTGCAGAAAGTGAGTTAGGCTTGTTGCGGCGAAGACAGACTGTATCGGGTCTAAGGGAAGGATTCTTCTTTAGAAAGGACAATACTGGTTGCAGTCAAGCAACCGGCAACCTATCTGATACCTCATCCAACATTGATGTTGATTTCAATACAAACGAACAAACTGGAGCAAGCAGTTCACATATGGTCCTTAGTGTACATTCTGAACCTAATAATAGAGGAAGTAATGGACTTGGGATATCAGATGGCCAGAACTGTTTACAAGGAACCACATGTGAGAATTTTGACCGGCAAGACTCTGCTGCTCATGCAGAAGGAGAAGATCGGCAATCATCATTCAGTGTTGGGCTTGAAAGAATGGATGACACTGGCCAAAATGTTGATGTGTTTCCAGTTGAAGTTAGTGCTAATGAACTTACCCATCGAAGCTTACAAATTGAAAACTCAGAGAATAGTAATAATCAGGAATTCAGTGAGGTACGTAACGAGCAATCTGAGCTGGGTGATATAGTTAATGGTGAAAATAATTCATCAAATCGCAACAATCATATGGAGGTCAATATTGTTGATGACGTGAATTGGATTGAATCTGGTGCTCAAGAAGGAGAACAGACAGAAGATATTGAAAATGAAGCAAGTGGCTGGCTTCACAGTAACACTGAATGGCAAAATAGCACTGATGAAAGCATGGATGATAATCAGATCAGTCATACAACAAATGAGTGGCCTGAAAACAGTTTGGCAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAAGTGCCTGAACTGTGGCAAGAAGATGGCAGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGGTGGTAGGGTTCATGGATTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGTATGTATACTTAAAAGATGAGTTTCTGCACTTCTTGAGAAGTGTCTCTAATCTCCTTCACAGTAGTTTCCGTGAGAGTCTTGATCAGTTGATACAATCCTATGTTGAAAGGCAAGGTCATGCTCACATTGAGTGGGAGCTGCAAGAAACAGCCCCTTCTTCTGTCTCGGTAGAACAGGACCTTGAGCAGCAGAGTAGAGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTTCACTTGACTTGCCCTCTTTACCTATACCTCCTCCTCTACCACTTTGGGACCAGCACCCTCATCGTGACAACTGGACACATAATGACATAAGTAATCAGCGCCTAGGAATTGATTGGGAGATTATTAACGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAATAACATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACATGACTTCGAGTCACCAGATGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACTTGTTCGAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 2580 0.4337 MAIAGLRSVSVLDPSFLRDSHSQSSRRGGDGRRGSTRSSSLLQMWREIEDEHVVSQVQGRASEVLLEQRSDGLTADLSQEDTLDSQELGQGNVLEDAVLGENESETWSQSQSQNESHDGHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHGSNISRRNNSSRREWLGETEQERVRIIREWVQMSSQQRSVSSGENREELSAEIDTQIERVRDGLVINQSEGQTEHMRRSIRKLCGRQVMLDMLKKAERERQKEIQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGLLRRRQTVSGLREGFFFRKDNTGCSQATGNLSDTSSNIDVDFNTNEQTGASSSHMVLSVHSEPNNRGSNGLGISDGQNCLQGTTCENFDRQDSAAHAEGEDRQSSFSVGLERMDDTGQNVDVFPVEVSANELTHRSLQIENSENSNNQEFSEVRNEQSELGDIVNGENNSSNRNNHMEVNIVDDVNWIESGAQEGEQTEDIENEASGWLHSNTEWQNSTDESMDDNQISHTTNEWPENSLANEDGENSRLQEVPELWQEDGSFQEAVENWLGGPSDHESAPGGRVHGFYFPDDDNVYSVELRELLNRYVYLKDEFLHFLRSVSNLLHSSFRESLDQLIQSYVERQGHAHIEWELQETAPSSVSVEQDLEQQSRDQIVGQEGTVNSSLDLPSLPIPPPLPLWDQHPHRDNWTHNDISNQRLGIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDFESPDDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVIRAYSIQ. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04212 859 Coils Coil 243 270 - -
Seca4g04212 859 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Seca4g04212 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 793 857 IPR013083 -
Seca4g04212 859 Coils Coil 735 762 - -
Seca4g04212 859 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Seca4g04212 859 MobiDBLite consensus disorder prediction 100 137 - -
Seca4g04212 859 MobiDBLite consensus disorder prediction 17 39 - -
Seca4g04212 859 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 859 - -
Seca4g04212 859 SUPERFAMILY RING/U-box 806 852 - -
Seca4g04212 859 CDD mRING-HC-C3HC5_NEU1 807 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04212 Seca-Chr4 75572245 75578529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04212 807 853 C3H Transcription Factor Family AT3G06140 42.553 1.34e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04212 - - gmx:100801329 1286.94