Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04208 ATGGCGAACGGTACGGATTCGGAGCAGTTTGTGGTGCTTTCTACGGTGCGAACGGGTCTGAAGAGGGAGTTTGCCTTTGCCATGAAGGCCCAGTCTGAGATCTGTGCATCCCTCGGTCGAACCCGGTCCAACAAGAACCGTAATGAGGTTCACGCTCCGGCTAGCAAAAGGTCCAGGAAGTCCGGTTCAGTGAAGAAAAATAAGAATGAGGAGGATGTGGGTGATGCTCTGAGCGAGGAGGAGGAGGCAAAAAGTGACGTGGTGGACCTTGAAGAACCCAAGAATCAGGTGGGAGAAGAAACTGTGAGCGAGAATGAACCCAAAACTGAGAATGAGCATGTCTTGGATTGTTCAAAGGAGGAGGTGATGGATGAAATGGAGCAACCCGTTTGCGAAAATGGGGTCAAAGAGGGAGAGACATGTGCTAAGGAAGAAGGTACTATTCCAATTTTGTGTGGGGATGATTGCAAGGTGAAGGTGGTGTCTACAGAGAAGGCACCAAGGAGGTTTACAAGGTCAACACTGAGGAAAAAATTGGATGATGAAAAGGTGACCAGTGATGAAGGGAATGCTAATGCCATAGATGTTGACAATGGTGATGATGGTAAGAAGGAAAATGAGGCTGGCACGGTAATCACCACTACCCCAATTCAAGTAAAAAAGTCCAAGACTGGTTCTAATTGGAAGAAGTTCCCTTCGAAGCTGAAGGACCTTCTATCCTCTGGGATTCTTGAGGGACTGCCCGTGAGTTATATCCGCAGTTTGAAGGCGCGGAAGCCTGGGGAAGCAGGGCTCCGGGGAGAGATTAGAGGAGATGGGATTGTGTGCTATTGTGAAAGTTGTAATGGGGTTGAGGTTGTGACACCCACTGTGTTTGAGCTGCATGCTGATAGTTCAAACAAACGCCCCCCGGAGTATATTTACCTTGAGAATGGAATTACCCTCCGTGATATCATGAATACATGTTTGAACATTCCATTAGACTCTTTGGAGGAAGCTGTCCAAAAGGTCCTTGGAGGCTTTACTATGAAGAAATCTAGCTTCTGTGTGAACTGCAGAGATGTCAATGTTGTATCAACACTATTATGCAACTCATGCATGGGACTGTCAAAGGAATGTCAACCTAGTCCCACTCAAACAACTGAGACTAGCAGTAGTTGTGTTTCACTAGCAGTTCAATCGAGATCCCCAGAACCAGATGTGCTTCCAAAGTCATTGAACAATGGAATGAAACACAGTACACCTCGTGGTAAGAGTCAAGGAAGATTAACTAGGAAGGATCTAGGATTGCACAAGTTGGTCTTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGGAAGCAACTATTGGTAGGTTACAAAAGGGGTTTTGGAATTGTTTGTGGCTGCTGTGAGTGTGAGGTCAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTAATGGAGTCTCACTCCATGAGTTGTCCATCTCGTTATCAAAAGACAGAAGGATTTCTACCCGTGATAATGATGATCTCTGCAGTATATGTCGAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGTATACCAAGTGGTACCTGGTATTGTAAATATTGTCAGAATATATTCCAGAAAGACAGATATGTAGCGCATAATGCGAATGCTCTAGCAGCTGGAAGGGTTGCAGGCGTTGATCCTATGGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAACTCAGGAGGTTGACCATGGTGGATGTGCACTGTGCAGAGACCAAGATTTCAGCATAAGTTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAGAGAATATCATGTAGGGTGTTTGAAGGATCATAACATGCAGATCCTAGAGGTATTACCTGAAGGGAATTGGTTCTGCTGCTCTGATTGTGATCAAATTCACACTGCTATGCTAAATTTGGTGGCTCGTGGGGAAGAGAATCTTCCAGATTCCCTCCTAAGTTTGATTAAAAAGAAGCATGAGGAAAAAGGCTTAGAAACTGAGGCTGGTCTTGATATAAAATGGAGGATTCTGAACTGGAATTTGGATGCTTCTGATAAGAATAGGTCATTGCTTTCAAAAGCTGTTGCTATCTTCCATGAGCGGTTTAATCCTATAGTTGATTCTGCTTCAGGCCTTGATTTCATTCCAGCCATGCTTTATGGGTAA 2280 0.4478 MANGTDSEQFVVLSTVRTGLKREFAFAMKAQSEICASLGRTRSNKNRNEVHAPASKRSRKSGSVKKNKNEEDVGDALSEEEEAKSDVVDLEEPKNQVGEETVSENEPKTENEHVLDCSKEEVMDEMEQPVCENGVKEGETCAKEEGTIPILCGDDCKVKVVSTEKAPRRFTRSTLRKKLDDEKVTSDEGNANAIDVDNGDDGKKENEAGTVITTTPIQVKKSKTGSNWKKFPSKLKDLLSSGILEGLPVSYIRSLKARKPGEAGLRGEIRGDGIVCYCESCNGVEVVTPTVFELHADSSNKRPPEYIYLENGITLRDIMNTCLNIPLDSLEEAVQKVLGGFTMKKSSFCVNCRDVNVVSTLLCNSCMGLSKECQPSPTQTTETSSSCVSLAVQSRSPEPDVLPKSLNNGMKHSTPRGKSQGRLTRKDLGLHKLVFEEDVLPDGTEVAYYARGKQLLVGYKRGFGIVCGCCECEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRISTRDNDDLCSICRDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNIFQKDRYVAHNANALAAGRVAGVDPMEQINQRCIRIVKTQEVDHGGCALCRDQDFSISFGPRTVIICDQCEREYHVGCLKDHNMQILEVLPEGNWFCCSDCDQIHTAMLNLVARGEENLPDSLLSLIKKKHEEKGLETEAGLDIKWRILNWNLDASDKNRSLLSKAVAIFHERFNPIVDSASGLDFIPAMLYG. 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04208 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 670 IPR013083 -
Seca4g04208 759 Pfam Tify domain binding domain 267 322 IPR032308 -
Seca4g04208 759 Pfam Tify domain binding domain 458 506 IPR032308 -
Seca4g04208 759 Pfam PHD-finger 525 566 IPR019787 -
Seca4g04208 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 516 581 IPR013083 -
Seca4g04208 759 MobiDBLite consensus disorder prediction 80 112 - -
Seca4g04208 759 ProSitePatterns Zinc finger PHD-type signature. 525 564 IPR019786 -
Seca4g04208 759 MobiDBLite consensus disorder prediction 375 393 - -
Seca4g04208 759 CDD PHD1_AIRE 524 564 - -
Seca4g04208 759 PANTHER AUTOIMMUNE REGULATOR 41 759 - -
Seca4g04208 759 MobiDBLite consensus disorder prediction 375 422 - -
Seca4g04208 759 MobiDBLite consensus disorder prediction 36 112 - -
Seca4g04208 759 SUPERFAMILY FYVE/PHD zinc finger 511 567 IPR011011 -
Seca4g04208 759 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 511 588 - -
Seca4g04208 759 ProSiteProfiles Zinc finger PHD-type profile. 522 567 IPR019787 -
Seca4g04208 759 SMART PHD_3 524 565 IPR001965 -
Seca4g04208 759 SMART PHD_3 612 668 IPR001965 -
Seca4g04208 759 SUPERFAMILY FYVE/PHD zinc finger 604 665 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04208 Seca-Chr4 75515500 75521410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04208 232 759 PHD Transcription Factor Family AT2G36720 42.617 1.92e-159 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g04208 TDBD 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04208 - - aprc:113859749 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04208 4 75515500 75521410 Seca4g04208 4 75515500 75521410 ECH
Seca4g04208 4 75515500 75521410 Seca4g09269 4 220016995 220024740 PCT