Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04200 ATGATGCCAAAGGTCACAACTGGCTTCTCAAATTCCTCTCAAGGGCTGCAGATGTTTCCTGTGACTGAATATATGGTTTCACCCTCTGTTGAAGTCAACTCTGCCTCTGGTTCACACTCTAGTTCCCTCCTCTTCTATCTCTCTGATCTCAAAGATAAGCTTAGTCAGCTTCAAAATCTGGTTGGTGTTCTGCTTTCCCCTGAACCTGAGTCAACAACTAATTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAACTCATAGTTGCAGCTAGTTCAATGAGATTCACCTGCCAACAAATGGCTCAAGGTACTACTACTTGCACTAACGAATTGCGCCACCACCAATTTGATCATGATAAGTTACCACATCAATCAAACTTATTTGGCAATAATAATAGAGATAGAGGCATGCTTAATAACATAGGTTCAGATATTAGAGGGCCAAGTTTCTATTCTAGTAATTCTGAGGACTGGTTTACTGAAAGCTATAATAATCATGATCATCATAATAATAATAGTAATTGTAACCTCAAGGATGATTATCAATGTGTGACAATATGTGAAGCCAATATACATAGTGAAGGAGGATTAATGTCACAATTAGGGGATGATGAAACGGATATAATAGAATTGGATGCTTCTGATTTGTTGGCAAGGTACACACATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTATAAAACAAATGCAGCCTTGAGCAACCCAATGAAAAACAGAGGGAGGTTAATATTGGGTGAGGGAAGTGGGTGTTTGAAGGCCAAGAAATATTCATGCCCATATGAAGGGTGTAGGTGGAACCAAAAGCATGCAAAGTTTCAGCCTTTGAAGTCAATGGTTTGTGTGAAAAACCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACATGAGAAACACTGTGGGGACCCCAAGTGGCAGTGCTCATGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGTCATGTTGCTTTGTTCGTGGGACACACCCCAGCCAATAGCAGTGCCTCAGGATCAGCAAATTCAGAACAGCACGCATTGCACTTGCAGCAGCAGATCGGTGTTGGAAGTTCACGATGA 1203 0.4206 MMPKVTTGFSNSSQGLQMFPVTEYMVSPSVEVNSASGSHSSSLLFYLSDLKDKLSQLQNLVGVLLSPEPESTTNSMAISSMNSTIQELIVAASSMRFTCQQMAQGTTTCTNELRHHQFDHDKLPHQSNLFGNNNRDRGMLNNIGSDIRGPSFYSSNSEDWFTESYNNHDHHNNNSNCNLKDDYQCVTICEANIHSEGGLMSQLGDDETDIIELDASDLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPMKNRGRLILGEGSGCLKAKKYSCPYEGCRWNQKHAKFQPLKSMVCVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPANSSASGSANSEQHALHLQQQIGVGSSR. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04200 400 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Seca4g04200 400 Gene3D Classic Zinc Finger 222 295 - -
Seca4g04200 400 MobiDBLite consensus disorder prediction 375 400 - -
Seca4g04200 400 SUPERFAMILY beta-beta-alpha zinc fingers 223 249 IPR036236 -
Seca4g04200 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Seca4g04200 400 SMART c2h2final6 224 246 IPR013087 -
Seca4g04200 400 SMART c2h2final6 318 340 IPR013087 -
Seca4g04200 400 SMART c2h2final6 280 313 IPR013087 -
Seca4g04200 400 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 380 IPR044300 GO:0010044|GO:0010447
Seca4g04200 400 FunFam Zinc finger 45-like 223 247 - -
Seca4g04200 400 Gene3D Classic Zinc Finger 316 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04200 Seca-Chr4 75453312 75454514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04200 10 377 C2H2 Transcription Factor Family AT5G22890 45.220 1.19e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04200 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04200 - - vum:124833786 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04200 4 75453312 75454514 Seca4g04200 4 75453312 75454514 ECH