Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04197 ATGGAAGAGGAACAACACATCGCGAAAGGCAGACGCACCAAACGATTGAGGCTTTTGTCCCCTTGTGGTGCCACCGTCATGACATCTAGCTGCTCAAGCGGTGATAATAACAATGCTAATTCGTTTTCTTCAAATGAGAGCACTGATCAAGAAGAGGAAGACATGGCTAATTGCTTGATTCTCCTTGCTCAAGGTAATAATAAGATCAGTAACCGAAAATTCGCTGAGATAGCCACACCTTCCGCTACTCCCAATAGTACTATTAATACCAAAGTTGGTTTCTATATTTATGAATGCAAAACATGTAACCGAACCTTCCCTTCCTTTCAAGCACTCGGTGGCCACAGAGCAAGTCACAAAAAGCCTAAACTCATCACTGTTGAGGAAAAGAAACCACCTCCACCACCGTCACCGCCGCCATCACAACCGAAAATCATTGCCAATTACGATGAGATTGGAGAAGCAGAGCAAATCCACATGAAAATTGGTCCTCCAATTTCTCTTCAATTGGGGAATCAGAGTCACAGGGCTTTCCATGGAAACAACAAGGCTAAGATTCATGAGTGTTCAATTTGTGGCTCAGAATTCACATCTGGACAAGCATTGGGTGGTCACATGAGGAGGCATAGGGCGGCATCCACAAACATCACCACCACTGAGACAAGTTCTAACATCGCCACCGTCGCCATCGCCGCAAACAGGGAGGTTCAGCACCGGAATATTCTAGAATTGGATCTTAACCTTCCGGCGCCGGAAGATGACCTCCGGGAATCGAAGTTTCAGTTTCCGGCAACTCAAAAATCTATGGTGCTGTCGGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 849 0.4617 MEEEQHIAKGRRTKRLRLLSPCGATVMTSSCSSGDNNNANSFSSNESTDQEEEDMANCLILLAQGNNKISNRKFAEIATPSATPNSTINTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLITVEEKKPPPPPSPPPSQPKIIANYDEIGEAEQIHMKIGPPISLQLGNQSHRAFHGNNKAKIHECSICGSEFTSGQALGGHMRRHRAASTNITTTETSSNIATVAIAANREVQHRNILELDLNLPAPEDDLRESKFQFPATQKSMVLSAAPALVDCHY. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04197 282 MobiDBLite consensus disorder prediction 29 50 - -
Seca4g04197 282 SUPERFAMILY beta-beta-alpha zinc fingers 96 209 IPR036236 -
Seca4g04197 282 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Seca4g04197 282 Pfam C2H2-type zinc finger 187 211 - -
Seca4g04197 282 Pfam C2H2-type zinc finger 97 122 - -
Seca4g04197 282 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Seca4g04197 282 Gene3D Classic Zinc Finger 170 239 - -
Seca4g04197 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Seca4g04197 282 PANTHER ZINC FINGER PROTEIN ZAT5 36 266 - -
Seca4g04197 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Seca4g04197 282 SMART c2h2final6 187 209 IPR013087 -
Seca4g04197 282 SMART c2h2final6 97 119 IPR013087 -
Seca4g04197 282 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04197 Seca-Chr4 75434033 75434917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04197 3 282 C2H2 Transcription Factor Family AT2G28200 44.951 3.53e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04197 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04197 - - aprc:113858527 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04197 4 75434033 75434917 Seca4g04197 4 75434033 75434917 ECH
Seca4g04197 4 75434033 75434917 Seca8g05289 8 143512798 143514180 ECH
Seca8g05289 8 143512798 143514180 Seca4g04197 4 75434033 75434917 ECH
Seca2g04702 2 133188183 133189043 Seca4g04197 4 75434033 75434917 ECH