Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04196 ATGGCGGGGAAGGTGTCGAAGGCAGCTTACGATGCAAAGATGTGGAAGCTTCTGCGAGAGTACAGCCAGGTACTGGTGGTTTCATCGGATAATGTGGGGTCCAACCAGCTTCAGGGGATACGAAGGGCACTCCATGATGACTCGGTGGTAGTGATGGGGAAGAACTCATTGATGAAGCGCTCTATCATTGAGGATGCTCACAAAACTGGGAATAAAGCCTTCCTTAACCTAGTTCCCCTCCTTGTGGTATCCCTCTTCCATCCCTTGCTACCTCAATCCAACATTTCTTCTACCAGTTTCATTACAGAATATTGA 315 0.4825 MAGKVSKAAYDAKMWKLLREYSQVLVVSSDNVGSNQLQGIRRALHDDSVVVMGKNSLMKRSIIEDAHKTGNKAFLNLVPLLVVSLFHPLLPQSNISSTSFITEY. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04196 104 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 87 - -
Seca4g04196 104 Pfam Ribosomal protein L10 6 68 IPR001790 -
Seca4g04196 104 SUPERFAMILY Ribosomal protein L10-like 7 63 IPR043141 -
Seca4g04196 104 Gene3D - 3 86 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04196 Seca-Chr4 75394545 75395670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04196 1 81 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 61.176 8.08e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04196 K02941 - mnt:21409050 110.923