Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04190 ATGGACCCAATGGATCTTCATCCAGAGACTCTGGTGCATATTAATGACTTTGAGCTGCATGACTTTGTCGATGATGCCAACTTTGATCAGTTTATCAATTCAATTCGTGGGGAGAATGAAGATGATATCTGCAGCTTCAGTTCTGACCTTCTGAATGGCTGCTTTGTTGATAACACATTCCTTTCATACCCTGCAAACCCATTTGACCAGTGCAATAGTAATTCTGTGAATGTTTATGATCCAAGCTCTACACTTAGCTCCTTCTCTTGTTTTGATGAAGAAGAACCCAAGGGAGAAAGTGGAGAAGCAGAAGAAAGGGAGAATTCTTCTGAAACAACAACCACCACCACTGCAACTACAAGTGTTAATACTAAGTCAAGGCCAAAAACTGATAGGTCTAAGACTTTGATTTCTGAGAGGAGGAGGAGAGGTCGAATGAAGGACAAGCTTTATGCATTGCGTTCTTTGGTACCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATGTGTATGAGCTTCAAGCACAAGCCAAGAAGCTCAAGGCTGAGGTTTCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTGAAAACCCCATGAAGGTTCAATTCACTGACAACAGCCGTTCAATCTATAAGAAGATCATTCAGATGGACATGATTCAAGTGGATGAAAGAGAGTTTTATGTGAAAATAGTGTGCAATAAGGGAGAAGGGGTGGCTGCCTCATTGTACAAGTCTCTTGAATCTCTGACAGGCTTCAATGTTAAGAATTCAAACTTGGCCACAGCTTCTGACAGTTTTCTACTTACATTTTCATTGAATGTTAAAGGCTCAGAACCAGAAATTAACCTGTCCAATTTGAAGCTATGGGTGACTGGCGCTTTTCTGAACCAAGGCTTTGAATTCATACCTTCTTTTCACACTTGA 963 0.4039 MDPMDLHPETLVHINDFELHDFVDDANFDQFINSIRGENEDDICSFSSDLLNGCFVDNTFLSYPANPFDQCNSNSVNVYDPSSTLSSFSCFDEEEPKGESGEAEERENSSETTTTTTATTSVNTKSRPKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVYELQAQAKKLKAEVSGLEASLLVSENYQGSIENPMKVQFTDNSRSIYKKIIQMDMIQVDEREFYVKIVCNKGEGVAASLYKSLESLTGFNVKNSNLATASDSFLLTFSLNVKGSEPEINLSNLKLWVTGAFLNQGFEFIPSFHT. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04190 320 SMART finulus 136 185 IPR011598 GO:0046983
Seca4g04190 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Seca4g04190 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 197 IPR036638 GO:0046983
Seca4g04190 320 Coils Coil 176 196 - -
Seca4g04190 320 Gene3D - 121 196 IPR036638 GO:0046983
Seca4g04190 320 MobiDBLite consensus disorder prediction 92 109 - -
Seca4g04190 320 MobiDBLite consensus disorder prediction 89 140 - -
Seca4g04190 320 MobiDBLite consensus disorder prediction 110 126 - -
Seca4g04190 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 126 196 - -
Seca4g04190 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 15 310 - -
Seca4g04190 320 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04190 Seca-Chr4 75228879 75231125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04190 11 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.526 1.99e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g04190 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04190 K26214 - gmx:100778649 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04190 4 75228879 75231125 Seca4g04190 4 75228879 75231125 ECH
Seca4g04190 4 75228879 75231125 Seca4g09262 4 219916224 219918326 PCT