Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04188 ATGGAACTTGGAATTCAGAATAATTTCGGATGCAAGCATTACAGAAGGAGATGCAAGATCAGGGCACCGTGTTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAACGAAGCTAAGAACTCTGAGGACATTAATCCTCAGGATCGTCATGATATCCCACGCCATGAAATTAAAAAGGTCATTTGCTCCTTATGTGACACAGAACAAGATGTTCAACAGCACTGCATAAACTGTGGAGTATGCATGGGCAATTACTTTTGTGCTACATGCAAATTCTTTGATGATGATATTTCAAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAATTTTTTCCATTGCAAGAGATGTGGATGCTGCTACTCCAAGGTAATGGAAGAGGGGCACCGTTGTGTAGAAAGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTAAGAGATATCACCGTCTTACCTTGCGGGCATACTATACATTTAGAGTGTGTTAAAGAGATGGAACAACATCATAGGTTTTCATGTCCTGTTTGCTCAAAATCCATCTGTGACATGTCAAGTATGTGGAAGAAGCTTGACCAAGTGATTGCCTCAACTCCAATGCCAGAAATGTACAAAAATAAATTAGTGTGGATATTGTGCAATGATTGTGGAATAAACTCTCAAGTGCAATTCCACATTGTGGCGCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAGGGAATACCTTCTAACTCATGCTCGTCTGGGGTTGCTGGTATGGTGAGATGA 816 0.4093 MELGIQNNFGCKHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEDINPQDRHDIPRHEIKKVICSLCDTEQDVQQHCINCGVCMGNYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEEGHRCVERAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLECVKEMEQHHRFSCPVCSKSICDMSSMWKKLDQVIASTPMPEMYKNKLVWILCNDCGINSQVQFHIVAHKCLSCNSYNTRQIQGIPSNSCSSGVAGMVR. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04188 271 SUPERFAMILY Zinc hairpin stack 83 140 IPR037275 -
Seca4g04188 271 SUPERFAMILY RING/U-box 146 195 - -
Seca4g04188 271 Pfam RING-type zinc-finger 147 187 IPR027370 -
Seca4g04188 271 Pfam Zinc-ribbon 194 252 IPR039512 -
Seca4g04188 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 255 - -
Seca4g04188 271 SMART ring_2 147 189 IPR001841 -
Seca4g04188 271 SUPERFAMILY CHY zinc finger-like 5 82 IPR037274 GO:0008270
Seca4g04188 271 Pfam CHY zinc finger 11 92 IPR008913 GO:0008270
Seca4g04188 271 ProSiteProfiles Zinc finger CTCHY-type profile. 82 146 IPR017921 -
Seca4g04188 271 Gene3D - 220 259 - -
Seca4g04188 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 219 IPR013083 -
Seca4g04188 271 ProSiteProfiles Zinc finger CHY-type profile. 4 80 IPR008913 GO:0008270
Seca4g04188 271 ProSiteProfiles Zinc finger RING-type profile. 147 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04188 Seca-Chr4 75206143 75208566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04188 9 265 C2H2 Transcription Factor Family AT3G18290 38.868 2.68e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04188 K10144 - gmx:100812709 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04188 4 75206143 75208566 Seca4g04188 4 75206143 75208566 ECH