Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04184 ATGGCCCAGTTAGTTTGTGGAGGCTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAGTGTGCAATGCTCTTGTTGTCACACTGTCAATCTAACTTTGGAAGGTAAGCATCAAATGCCTATTTTGACAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTCCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAGCCTCATTTGGGGTCAGTATAATCTCCTCTTCCTTACTATGTATGTAG 279 0.4373 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLTLEGKHQMPILTANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVASFGVSIISSSLLCM. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04184 92 Pfam LSD1 zinc finger 6 30 IPR005735 -
Seca4g04184 92 Pfam LSD1 zinc finger 53 77 IPR005735 -
Seca4g04184 92 PANTHER PROTEIN LSD1 1 81 IPR040319 -
Seca4g04184 92 NCBIfam zinc finger domain, LSD1 subclass 3 32 IPR005735 -
Seca4g04184 92 NCBIfam zinc finger domain, LSD1 subclass 50 76 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04184 Seca-Chr4 75140262 75140658 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca4g04184 zf-LSD1 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04184 - - dzi:111276442 151.754