Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04181 ATGCTCGCCTTGCATTTCCGACCATGCCTCTTTCCTTCATTCTCTCGTTGCATTACCATTAGGGTTTCCCCTCTCTTCTCTCTCCCTTTCTCTTTCTCTTTCCCTCTCTCCTCAACTCCTCTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCCCGCGCCGCCGCCGCCGCCAAGAAGAAACAACAGCCTTCCTCATCCCCCAGGAAAAGAAAATCCCCTCACTCCCCCTCTCCCGCCCAAAACCCTAACAACCTCAAAACCCCCGAAACCCTCCAACAACCCAACAAATCACCGGAAGCCGTTGAAGCCGTTCAACAGCCCAACAAACCACCGCAGGAAACCGCCAAGGCTGAACCTCCGAACAAGATTAGCAAAGTGTCTTCTTCCCGGGAGATAATCGCTAAGCTGAAGGAGCGGGTTCCGCGGCTGAAGAAGAAGCCCTCGGAGTTCGATCCTAGCTCGGTTACATGCTGGGAGAAAGGCCAACCTGTGCCCTTCTTGTTCCTCTCCTTGGCGTTCGACATGATCGCTGAGGAGACTGGACGAATTGTGATTACGGACATTGTGTGCAACCTGTTGAGGGCTGTGATTCACGCCACTCCGGAGGATCTCGTGCCGGTTGTTTATCTCTCAGCGAACAGGATTGCTCCAGCGCACGAAGGGTTGGAATTGGGAATCGGCGACTCTTCCATTATCAAGGCGCTTGCCGAGGCTTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTATAAGGAGAAAGGTGACTTGGGTTTAGTTGCCAAAGCGAGCCGTTCGTCTCAGTCTATGATGCGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGATATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCGAAACCACCTCCTGAAATTCAATCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAGTATCTGCACTGCTTAAGGATGGTGTGTGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTCTCTGAAATTCTAAATAAATTCCAGGATGCTGAGTTTACCTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCGGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAACTGGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTCCAGGTGCTTAGTACCCGGGCTCGCAAAAATGTAACTATGAGTGACATAAAAGTTGATGTTTGTGTCTTTGCTTTTGATTTGCTGTATCTTAACGGCCAAGCACTTCTCCAGGAAAACCTGAAAATCCGTAGAGAGAATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAAAAGTTTCTTGACAAAGCTGTTGATGCAAGTTGTGAAGGATTAATTATTAAAACATTAAATGAAGATGCCACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAGCTGAAAAAAGATTATCTGGATAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGCACAGGAGTCTATGGTGCCTTTCTCCTTGCTTGCTATGACAACAACAATGAAGAATTTCAAAGTATCTGTAAGATAGGAACCGGATTCTCTGAAGAAATGCTTGACGAACGTTCTACTAGCCTTCGCGCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCAGAAACAATCAATCCTGATGTCTGGTTTGAAGCTAGTGAGGTATGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCCGTTCACCGTGCTGCAGTGGGCATTGTAGATTCGGATAAGGGCATATCTCTTCGATTTCCACGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCATCAACTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACACAAACAACCAAGATGACAATGATGATGATTGA 2361 0.4566 MLALHFRPCLFPSFSRCITIRVSPLFSLPFSFSFPLSSTPLRAMSKPPSAFDALMSGARAAAAAKKKQQPSSSPRKRKSPHSPSPAQNPNNLKTPETLQQPNKSPEAVEAVQQPNKPPQETAKAEPPNKISKVSSSREIIAKLKERVPRLKKKPSEFDPSSVTCWEKGQPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRAVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDSSIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLEEAAKIVKQVYSVLPDYDKIVSALLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEILNKFQDAEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVTMSDIKVDVCVFAFDLLYLNGQALLQENLKIRRENLYASFEEESGFLQFATTITSNDVEEIQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSEEMLDERSTSLRAKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKAPEQASSTEQVAEMYNAQKHNHTNNQDDNDDD. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04181 786 Gene3D - 148 416 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca4g04181 786 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 786 - -
Seca4g04181 786 MobiDBLite consensus disorder prediction 57 135 - -
Seca4g04181 786 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 154 404 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca4g04181 786 Gene3D - 424 622 - -
Seca4g04181 786 FunFam DNA ligase 414 620 - -
Seca4g04181 786 Pfam ATP dependent DNA ligase domain 414 618 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca4g04181 786 Pfam ATP dependent DNA ligase C terminal region 643 754 IPR012309 GO:0003910|GO:0006281|GO:0006310
Seca4g04181 786 MobiDBLite consensus disorder prediction 75 119 - -
Seca4g04181 786 Pfam DNA ligase N terminus 172 347 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca4g04181 786 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 406 624 - -
Seca4g04181 786 NCBIfam ATP-dependent DNA ligase 230 769 IPR000977 GO:0003910|GO:0005524|GO:0071897
Seca4g04181 786 FunFam DNA ligase 149 416 - -
Seca4g04181 786 ProSitePatterns ATP-dependent DNA ligase signature 2. 592 618 IPR016059 GO:0003909
Seca4g04181 786 SUPERFAMILY Nucleic acid-binding proteins 626 772 IPR012340 -
Seca4g04181 786 Gene3D DNA ligase/mRNA capping enzyme 443 568 - -
Seca4g04181 786 CDD OBF_DNA_ligase_I 626 771 - -
Seca4g04181 786 ProSiteProfiles ATP-dependent DNA ligase family profile. 520 656 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca4g04181 786 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 438 446 IPR016059 GO:0003909
Seca4g04181 786 Gene3D - 623 785 IPR012340 -
Seca4g04181 786 CDD Adenylation_DNA_ligase_I_Euk 403 621 - -
Seca4g04181 786 FunFam DNA ligase 623 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04181 Seca-Chr4 75110833 75125640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04181 1 786 Core DNA Replication Machinery Family AT1G08130 66.877 0.0 1076
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04181 K10747 - gmx:100783155 1189.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04181 4 75110833 75125640 Seca4g04181 4 75110833 75125640 ECH