Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04163 ATGGGAAGAGCTCCATGTTGTGACAAAGCAACTGTTAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGACTACATCGACAAGCATGGAACTGGTGGGAATTGGATTGCTCTTCCTCATAAAGCAGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAACATGGAGATTTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGGAGGACAGACAATGATATCAAGAACTACTGGAACACCAAGCTAAAGAAAAAGCTCATGGGTTTGCTTCCTTTATCACATCAGAGAAAACCTTCATTTCCATCCTCCAATAATCAAAACCCACAACCCTCTCAATCTTCTCATCCACTGCACAGAGACTACTACTACTACAGTCCAACAACAACCTTATCCTTCACAGGTCTTGAACCCTGCAATATTTCACTTCCTTCAAGTAACTATGCTAATTATAATACCACCACAAGTTGCACAACAACCTCAGTTTCTGATCTCCCCTTTTACCAAAACCAAGATTCCATGGTTAGTGTTATGAGTCCCATGCAGCAATACTACCCTATCTGCAGAGACAGCATGCTCATGTTTGGAAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGGCAGAGAGATCAAGCAAGAAGAAATTGGTTATCAGAGCTACATGTCCACTGGATTTGATGACTATAATACTAATAATAATCATAGTTTTATGCTTAGTTATAGCAGCATTAGTGATGGTGGTGAAAACATTAACCAATATACAGAAAAATCATCTGGGGGTGGGTGCTGTGGCCAAACTCTAACCCCATTTGATTATGGTGTTGAGGATATTAAGCAATTGATTAGTAGTAGTGGCAGCAGTGGCTTCAATATTGATGAAAACAAGAGGGAGGAGAAGAAGGCCATGTACTACAACTACTACTGA 1026 0.4142 MGRAPCCDKATVKRGPWSPEEDSKLKDYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHQRKPSFPSSNNQNPQPSQSSHPLHRDYYYYSPTTTLSFTGLEPCNISLPSSNYANYNTTTSCTTTSVSDLPFYQNQDSMVSVMSPMQQYYPICRDSMLMFGSEGSCSSSDGSCTQGREIKQEEIGYQSYMSTGFDDYNTNNNHSFMLSYSSISDGGENINQYTEKSSGGGCCGQTLTPFDYGVEDIKQLISSSGSSGFNIDENKREEKKAMYYNYY. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04163 341 MobiDBLite consensus disorder prediction 127 149 - -
Seca4g04163 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca4g04163 341 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca4g04163 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca4g04163 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca4g04163 341 FunFam Transcription factor MYB36 70 140 - -
Seca4g04163 341 CDD SANT 71 111 IPR001005 -
Seca4g04163 341 SMART sant 67 115 IPR001005 -
Seca4g04163 341 SMART sant 13 64 IPR001005 -
Seca4g04163 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca4g04163 341 Gene3D - 7 68 - -
Seca4g04163 341 CDD SANT 16 62 IPR001005 -
Seca4g04163 341 PANTHER OS09G0431300 PROTEIN 1 286 - -
Seca4g04163 341 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca4g04163 341 FunFam Transcription factor RAX3 7 68 - -
Seca4g04163 341 Gene3D - 70 147 - -
Seca4g04163 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04163 Seca-Chr4 74817813 74819882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04163 1 119 MYB Transcription Factor Family AT5G57620 89.916 1.73e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g04163 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04163 K09422 - gmx:100779919 391.734