Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04162 ATGGCCGCTACAGCTACCTTACTTCTTTGTCGCCTCCAATTCATCGCCAAGCCTCAACCTTTCCTATCACCTCATTCAATCCCTTTTCATTTCTCCCTCACCCCCAAAACAAAGAAACCTCGTCGATTCCGATTGTTCTCAATGGCCGCGGAACCGAAGGAGTCGCCTGCTAACAACCCCGGTCTTCATACAACTCTAGACGAAGCTACTAAGGGATACTTTATGCAACAAACTATGTTTAGAATCAAAGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTTTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTTATGGGGTATGAGAACACAGCAGAAGCTCCAAGCAATCCAGTTGATAGAACAGTTTGGGCCTTCTCTCAAAAAGCTACAATTGAGCTGACACATAATTGGGGTACCGAAAGTGATCCAGAGTTCAAAGGGTACCACAATGGCAATTCTGAGCCTCGTGGCTTTGGTATGTGA 516 0.4535 MAATATLLLCRLQFIAKPQPFLSPHSIPFHFSLTPKTKKPRRFRLFSMAAEPKESPANNPGLHTTLDEATKGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYENTAEAPSNPVDRTVWAFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGM. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04162 171 ProSitePatterns Glyoxalase I signature 1. 77 98 IPR018146 GO:0004462|GO:0046872
Seca4g04162 171 Gene3D - 49 171 IPR029068 -
Seca4g04162 171 PANTHER LACTOYLGLUTATHIONE LYASE GLYOXALASE I 28 170 - -
Seca4g04162 171 CDD GlxI_Zn 75 170 - -
Seca4g04162 171 NCBIfam lactoylglutathione lyase 75 170 IPR004361 GO:0004462|GO:0046872
Seca4g04162 171 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 65 169 IPR029068 -
Seca4g04162 171 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 77 157 IPR004360 -
Seca4g04162 171 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 74 171 IPR037523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04162 Seca-Chr4 74760817 74763418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04162 21 170 Calmodulin-binding Proteins AT1G08110 73.548 1.40e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04162 K01759 - gmx:100779383 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04162 4 74760817 74763418 Seca4g04162 4 74760817 74763418 ECH